View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_524 (Length: 215)
Name: NF11386A_low_524
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_524 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 50407626 - 50407821
Alignment:
| Q |
20 |
aattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtt |
119 |
Q |
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| T |
50407626 |
aattggaacctcacttggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtt |
50407725 |
T |
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| Q |
120 |
tctgaacatgttttaacaaagtacaaatttccacgaccactcatgttcacattgattatgtttttatcctgtgtcggtcacttattgatagccttt |
215 |
Q |
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| T |
50407726 |
tctgaacatgttttaacaaagtacaaatttccacgaccactcatgttcacattgattatgtttttatcctgtgtcggtcacttattgatagccttt |
50407821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 50385601 - 50385728
Alignment:
| Q |
24 |
ggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctg |
123 |
Q |
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| T |
50385601 |
ggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctg |
50385700 |
T |
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| Q |
124 |
aacatgttttaacaaagtacaaatttcc |
151 |
Q |
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| T |
50385701 |
aacattttctaacaaagtacagatttcc |
50385728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 50390746 - 50390873
Alignment:
| Q |
24 |
ggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctg |
123 |
Q |
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| T |
50390746 |
ggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctg |
50390845 |
T |
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| Q |
124 |
aacatgttttaacaaagtacaaatttcc |
151 |
Q |
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| T |
50390846 |
aacattttctaacaaagtacagatttcc |
50390873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 50394020 - 50394147
Alignment:
| Q |
24 |
ggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctg |
123 |
Q |
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||||| ||||| |||| ||||| | |||||||||||| ||||| || ||||| || |||||||||||||||||| | ||||| || || |||||||||| |
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| T |
50394020 |
ggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctg |
50394119 |
T |
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| Q |
124 |
aacatgttttaacaaagtacaaatttcc |
151 |
Q |
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| T |
50394120 |
aacattttctaacaaagtacagatttcc |
50394147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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