View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_53 (Length: 413)
Name: NF11386A_low_53
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 227 - 407
Target Start/End: Complemental strand, 47529654 - 47529474
Alignment:
| Q |
227 |
aattagaacatatcctaaagaaattatacaatcataaacatttttatgactgtcataaaactataactacagccacgcagtgtaaggccatttaggtttc |
326 |
Q |
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| T |
47529654 |
aattagaacatatcctaaagaaattatacaatcataaacatttttatgactgtcataaaactataactacagccacgcagtgtaaggccatttaggtttc |
47529555 |
T |
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| Q |
327 |
ttcagtggtttaaggcacatgacagtgtcctgaaattctaagaaagtaatatcaacaaattgacgcttgtcattacctgtc |
407 |
Q |
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| T |
47529554 |
ttcagtggtttaaggcacatgacagtgtcctgaaattctaagaaagtaatatcaacaaattgacgcttgtctttacctgtc |
47529474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 47529873 - 47529722
Alignment:
| Q |
8 |
caaagacagtatacataagaaacttctttaaatcagaattgtgtccctcacccttttgcttggcgatggtagtatttaacgctataattcaaactatgat |
107 |
Q |
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| T |
47529873 |
caaacacagtatacaaaagaaacttctttaaatcagaattgtgtccctcacccttttgcttggagatggtagtatttaacgctataattcaaactatgat |
47529774 |
T |
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| Q |
108 |
gcaaaatgatgataagtagataacagcaaaaccatgaatgattatctatttg |
159 |
Q |
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| T |
47529773 |
gcaaaatgatgataagtagataacagcaaaaccatgaatgattatctatttg |
47529722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 47524263 - 47524112
Alignment:
| Q |
243 |
aaagaaattatacaatcataaacatttttatgactgtcataaaactataactacagccacgcagtgtaaggccatttaggtttcttcagtggtttaaggc |
342 |
Q |
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| T |
47524263 |
aaagaaactataccatcaaagacatttttatgactgtcgtaa---tataactaccatcaagcaatacaaggccatacaggtctattcagggatttatggc |
47524167 |
T |
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| Q |
343 |
acatgacagtgtcctgaaattctaagaaagtaatatcaacaaattgacgcttgtc |
397 |
Q |
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| T |
47524166 |
acatgatagtgttctgaaattctaagaaagttttatcaacaaattgacacttgtc |
47524112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 47551222 - 47551161
Alignment:
| Q |
336 |
ttaaggcacatgacagtgtcctgaaattctaagaaagtaatatcaacaaattgacgcttgtc |
397 |
Q |
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| T |
47551222 |
ttaagacacatgatagtgtcctgaaattcaaagaaagtataatgaacaaatttacacttgtc |
47551161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 44870228 - 44870298
Alignment:
| Q |
311 |
aggccatttaggtttcttcagtggtttaaggcacatgacagtgtcctgaaattctaagaaagtaatatcaa |
381 |
Q |
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| T |
44870228 |
aggccatataggtatattcagtggtttaaggcacatgatagagttgtgaaattctaagaaagtattatcaa |
44870298 |
T |
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