View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_536 (Length: 211)

Name: NF11386A_low_536
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_536
NF11386A_low_536
[»] chr2 (3 HSPs)
chr2 (1-203)||(4111557-4111759)
chr2 (1-155)||(27556087-27556244)
chr2 (1-153)||(28579975-28580128)
[»] chr3 (2 HSPs)
chr3 (8-155)||(5699611-5699760)
chr3 (59-155)||(6075476-6075575)
[»] chr7 (2 HSPs)
chr7 (13-155)||(11898102-11898246)
chr7 (1-153)||(5712861-5713014)
[»] chr8 (2 HSPs)
chr8 (29-158)||(15663234-15663366)
chr8 (15-153)||(15551149-15551290)
[»] chr4 (3 HSPs)
chr4 (59-153)||(18448525-18448622)
chr4 (72-155)||(11476179-11476263)
chr4 (8-158)||(20880795-20880945)
[»] chr5 (1 HSPs)
chr5 (71-145)||(19079994-19080069)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4111557 - 4111759
Alignment:
Q  1 atctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaaccttt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  4111557 atctgatatatataagatattgtttgtattccgctgcgagattttataaatccgaattatgcatgtttttgaaaatgatgacgtaacatcttgaaccttt 4111656  T
Q  101 tgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtgcaaagtgaaggcaagcagcaagatgactttcatcctctcttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  4111657 tgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaccgtgcaaggtgaaggcaaggagcaagatgactttcatcctctcttt 4111756  T
Q  201 gtt 203  Q
    |||    
T  4111757 gtt 4111759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 27556244 - 27556087
Alignment:
Q  1 atctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt--gaaaatgatgacgtaacatcttgaac- 96  Q
    |||||| |||| |||||| |||||| |||||||||||||| |||||| ||| | |||| ||||||||||||  |||||| ||||||| |||||||||||     
T  27556244 atctgagatatttgagatgttgtttttattccgctgcgag-ttttatgaaaaccgaattatgcatgtttttgagaaaattatgacgtgacatcttgaact 27556146  T
Q  97 cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 155  Q
    |||||||   |||  |||| ||||||| | ||||| || |||||| ||||| |||||||    
T  27556145 cttttgattaaatgatttagttgcattaattattgcttctggggtacaagggtgttaca 27556087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 28579975 - 28580128
Alignment:
Q  1 atctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaacctt 99  Q
    |||||| |||| ||||||  ||||| |||| || ||||||||||   ||| |  ||| |||||||||||  ||||||||||||||| ||||||||||  |    
T  28579975 atctgagatatttgagatgctgtttttatttcgttgcgagatttatgaaaaccaaattatgcatgttttaagaaaatgatgacgtatcatcttgaactct 28580074  T
Q  100 ttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 153  Q
    || || ||| || |||||||||||| ||||||  || |||||||||||| |||||    
T  28580075 tt-aattaaatgatttatttgcattaaatattacttttggggttcaagggtgtta 28580128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 5699611 - 5699760
Alignment:
Q  8 atatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaaccttttgaaa 105  Q
    |||| |||||| |||||| ||||||||| | || |||||| |||||  ||| |||||||||||  ||||||||||  ||| |||||||||| || |||||    
T  5699611 atatttgagatgttgtttttattccgctacaagtttttatgaaatccaaattatgcatgttttgagaaaatgatggagtagcatcttgaacattatgaaa 5699710  T
Q  106 taattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 155  Q
    ||| |||||||||||||| |||||||||||| ||||||||||||||||||    
T  5699711 taactgtttatttgcattaaatattgtttgtagggttcaaggatgttaca 5699760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 6075575 - 6075476
Alignment:
Q  59 atgcatgtttttga--aaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgttaca 155  Q
    ||||||||||||||  ||||||| |||||||||||||||   ||| || ||| || |||||||||||| |||||| |||||||||||||| | |||||||    
T  6075575 atgcatgtttttgagaaaatgataacgtaacatcttgaattcttttaattaaatgatttatttgcattaaatattttttgtggggttcaacggtgttaca 6075476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 11898246 - 11898102
Alignment:
Q  13 tgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgtttttga-aaatgatgacgtaacatcttgaa-ccttttgaaataat 109  Q
    ||||||||||||| |||||||||||||| |||||| ||| ||||||  |||||||||||||    |||| ||||||||||||||| |||||| |||||||    
T  11898246 tgagatattgtttttattccgctgcgag-ttttatgaaaactgaattctgcatgtttttgagttttgataacgtaacatcttgaatcctttttaaataat 11898148  T
Q  110 tgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 155  Q
    |||||||| ||||| ||||||  ||||||||||||||| |||||||    
T  11898147 tgtttattagcattaaatatttcttgtggggttcaagggtgttaca 11898102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 5712861 - 5713014
Alignment:
Q  1 atctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac-c 97  Q
    |||||| |||| |||||| |||||| |||| |||| |||| |||||| ||| |||||| |||||||||||  |||||||| ||| ||||||||||||  |    
T  5712861 atctgagatatttgagatgttgttt-tatttcgctacgag-ttttatgaaaactgaattatgcatgttttgagaaaatgaagacataacatcttgaattc 5712958  T
Q  98 ttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 153  Q
    ||||||| |||||| |||||||||||| ||||||| ||||||||||||||| |||||    
T  5712959 ttttgaa-taattgatttatttgcattaaatattgcttgtggggttcaagggtgtta 5713014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 15663234 - 15663366
Alignment:
Q  29 ttccgctgcgagattttataaat-ctgaatgatgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcattt 124  Q
    |||||||||||| |||||||||  |||||| ||||||||||||||  |||||||||||||||||||| ||| |||||||   ||   ||||||||||||     
T  15663234 ttccgctgcgag-ttttataaaaactgaattatgcatgtttttgagaaaatgatgacgtaacatcttaaactcttttgattaaacgatttatttgcatta 15663332  T
Q  125 aatattgtttgtggggttcaaggatgttacagtg 158  Q
    |||||||||||| |||||||||| ||||| ||||    
T  15663333 aatattgtttgtagggttcaagggtgttatagtg 15663366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 15551149 - 15551290
Alignment:
Q  15 agatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac-cttttgaaataattg 111  Q
    ||||||||||| ||||||||| |||| |||||| ||| | | || |||||||||||  |||||||||||||||||||||||||| |||||||   |||      
T  15551149 agatattgtttttattccgctacgag-ttttatgaaaacaggattatgcatgttttgagaaaatgatgacgtaacatcttgaactcttttgattaaatga 15551247  T
Q  112 tttatttgcatttaatattgtttgt-ggggttcaaggatgtta 153  Q
    |||||||||||| ||||||| |||| ||||||||||| |||||    
T  15551248 tttatttgcattaaatattgcttgtgggggttcaagggtgtta 15551290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 18448622 - 18448525
Alignment:
Q  59 atgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgtta 153  Q
    ||||||||||||||  ||||||||||||| |||||||||| |||||||   |||  |||||||||||| |||| || ||||||||||||||| |||||    
T  18448622 atgcatgtttttgagaaaatgatgacgtagcatcttgaactcttttgattaaatgatttatttgcattaaatactgcttgtggggttcaagggtgtta 18448525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 11476263 - 11476179
Alignment:
Q  72 aaaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 155  Q
    ||||||||||||| ||||||||||| |||||||    ||  |||||||||||| |||||||||||||| |||||||| |||||||    
T  11476263 aaaatgatgacgtgacatcttgaactcttttgattagatgatttatttgcattaaatattgtttgtggagttcaagggtgttaca 11476179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 20880945 - 20880795
Alignment:
Q  8 atatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaac-cttttgaaat 106  Q
    |||| |||||| |||||| ||||||| ||| ||||||   ||| | |||| |||||||||||||| ||  |||||||||| |||||||  |||||||       
T  20880945 atatttgagatgttgtttttattccgatgcaagatttatgaaaaccgaattatgcatgtttttgagaaa-atgacgtaacgtcttgaattcttttgatta 20880847  T
Q  107 aattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtg 158  Q
    |||  ||||||||||||  |||||  ||||||||||||||| ||||||||||    
T  20880846 aatgatttatttgcattacatatttcttgtggggttcaagggtgttacagtg 20880795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 19079994 - 19080069
Alignment:
Q  71 gaaaatgatgacgtaacatcttgaac-cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaa 145  Q
    ||||||||||| |||||||||||||| |||||| | |||||| |  ||||||||| |||||| ||||||||||||||    
T  19079994 gaaaatgatgatgtaacatcttgaactcttttg-attaattgatgaatttgcattaaatattatttgtggggttcaa 19080069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University