View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_539 (Length: 211)
Name: NF11386A_low_539
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_539 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 10922301 - 10922112
Alignment:
| Q |
1 |
gtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaaatcgactatagttgttaaaccaattgaatctgtggttagacttgattt |
100 |
Q |
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| T |
10922301 |
gtgaatgataagcgttggtgatggtaaattatacaggtagtatacatagaaaatcgactatagttgttaaaccaattgaatctgtggttcgacttgattt |
10922202 |
T |
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| Q |
101 |
tcacaa-----caataaatacgatatgtatctacaaattttgcctccaataggcggtgaggttgaattttgataacatgaaataagcact |
185 |
Q |
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| T |
10922201 |
tcacaacactgcaataaatacgatatgtatctacaaattttgcctccaataggcggtgaggttgaagtttgataacatgaaataagcact |
10922112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 10951130 - 10951102
Alignment:
| Q |
107 |
caataaatacgatatgtatctacaaattt |
135 |
Q |
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| T |
10951130 |
caataaatacgatatgtatctacaaattt |
10951102 |
T |
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