View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_540 (Length: 210)
Name: NF11386A_low_540
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_540 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 32880109 - 32879940
Alignment:
| Q |
20 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32880109 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32880010 |
T |
|
| Q |
120 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32880009 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtt |
32879940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 32898981 - 32898809
Alignment:
| Q |
20 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32898981 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32898882 |
T |
|
| Q |
120 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcat |
192 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32898881 |
atacacattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcat |
32898809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 32884937 - 32884770
Alignment:
| Q |
20 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
32884937 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatataaaaaagacatatgaatgccttt |
32884839 |
T |
|
| Q |
120 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcat |
192 |
Q |
| |
|
||||||||||||||||||||| | | ||| |||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
32884838 |
atacatattcttctaaatcatgt----ttcatatatctttgtcaagtggagtgtacatccattcgtggttcat |
32884770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University