View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_541 (Length: 210)
Name: NF11386A_low_541
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_541 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 14784811 - 14784646
Alignment:
| Q |
23 |
atgataagagctcaaagctgatttagatggaataagtttgccatcaaaacttaagcattgttgcttccaaaccacttactctgcttttaattttgtcaac |
122 |
Q |
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| T |
14784811 |
atgataagagctcaaaactgatttagatagcgtaagtttgccatcaaaactcaagcattgttgcttccaaaccacttactctgcttttaattttgtcaac |
14784712 |
T |
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| Q |
123 |
gatgttatgaaactttcccttggtagctctacctgaacttatgtttgcctccaaatacctcgccat |
188 |
Q |
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| T |
14784711 |
gatgttatgaaactttcccttggtagctctacctggacttatgtttgcctccaaatacctcgccat |
14784646 |
T |
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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 48899233 - 48899382
Alignment:
| Q |
29 |
agagctcaaagctgatttagatggaataagtttgccatcaaaacttaagcattgttgcttccaaaccacttactctgcttttaattttgtcaacgatgtt |
128 |
Q |
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| T |
48899233 |
agagctcaaaactaatttagataaagtaagtctaccgacaaaact-aagcattgttgcttccaa-ccacttagtctattttgaattttgtcaatgacgtt |
48899330 |
T |
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| Q |
129 |
atgaaactttcccttggtagctctacctgaacttatgtttgcctccaaatac |
180 |
Q |
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| T |
48899331 |
atgaaactttcccctagtagctctacctgcactaatgttagcccccaaatac |
48899382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 31116854 - 31116960
Alignment:
| Q |
31 |
agctcaaagctgatttagatggaataagtttgccatcaaaacttaagcattgttgcttccaaaccacttactctgcttttaattttgtcaacgatgttat |
130 |
Q |
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|||||||||||||||||||| | ||||| || | ||||||||||||||| |||||||||| ||||||| |||| ||| |||||| |||| |||||||| |
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| T |
31116854 |
agctcaaagctgatttagataaagtaagtctgtcggcaaaacttaagcattattgcttccaa-ccacttagtctgttttgaattttttcaatgatgttat |
31116952 |
T |
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| Q |
131 |
gaaacttt |
138 |
Q |
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|||||||| |
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| T |
31116953 |
gaaacttt |
31116960 |
T |
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