View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_550 (Length: 207)
Name: NF11386A_low_550
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_550 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 5823787 - 5823587
Alignment:
| Q |
7 |
ttttgaagctctgattcgtctgttttatccatatcaatactcaacaacacattctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
106 |
Q |
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| T |
5823787 |
ttttgaagctccgattcgtctgttttatccgaatcgatactcaacagcacgttctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
5823688 |
T |
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| Q |
107 |
ttacttgaagaatatcaccaactttgtaacgacaaagaccagaataagtagttataataaattcgtaaaatttaccaatttccacatcaacaaggtctac |
206 |
Q |
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| T |
5823687 |
ttacttgaagaatatcaccaactttgtaacgacaaagaccagaataagtagttataataaattcgtaaaatttaccaatttccacatcaacaaggtctac |
5823588 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
5823587 |
t |
5823587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 5832252 - 5832452
Alignment:
| Q |
7 |
ttttgaagctctgattcgtctgttttatccatatcaatactcaacaacacattctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
106 |
Q |
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| T |
5832252 |
ttttgaagctccgattcgtctgttttatccgaatcgatactcaacaacacgttctttcgcctcacgaatttgaactgaggatcagaattatggaatccat |
5832351 |
T |
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| Q |
107 |
ttacttgaagaatatcaccaactttgtaacgacaaagaccagaataagtagttataataaattcgtaaaatttaccaatttccacatcaacaaggtctac |
206 |
Q |
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| T |
5832352 |
tgacttgaagaatatcaccaactctgtaacggcaaaaaccggaataagttgtgattacaagctcataaaatttaccaatttggacatcagcaaggtctac |
5832451 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
5832452 |
t |
5832452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 78554 - 78424
Alignment:
| Q |
7 |
ttttgaagctctgattcgtctgttttatccatatcaatactcaacaacacattctttcgccttacaaacttgaattgtggatttgagttatggaatcctg |
106 |
Q |
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||||| |||||||| || |||||||||||| ||||||||| | ||||||||||||||| | ||||| | ||||||||| |||||||||| || || | |
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| T |
78554 |
ttttgtagctctgactcatctgttttatccgaatcaatactaagcaacacattctttcgacgcacaaaatggaattgtggtgttgagttatgaaacccgg |
78455 |
T |
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| Q |
107 |
ttacttgaagaatatcaccaactttgtaacg |
137 |
Q |
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| T |
78454 |
tgacacggagaatgtcaccaactctgtaacg |
78424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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