View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_555 (Length: 205)

Name: NF11386A_low_555
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_555
NF11386A_low_555
[»] chr2 (19 HSPs)
chr2 (20-190)||(44624828-44624998)
chr2 (40-190)||(44615455-44615605)
chr2 (29-190)||(39153105-39153266)
chr2 (53-181)||(39472763-39472891)
chr2 (53-190)||(39138692-39138826)
chr2 (29-184)||(39387469-39387624)
chr2 (56-190)||(39371163-39371297)
chr2 (29-190)||(39216703-39216864)
chr2 (29-190)||(39396627-39396788)
chr2 (54-183)||(39205742-39205871)
chr2 (29-184)||(39196485-39196640)
chr2 (29-184)||(39413004-39413159)
chr2 (56-190)||(39380496-39380630)
chr2 (61-183)||(44895114-44895236)
chr2 (54-180)||(39478294-39478420)
chr2 (29-184)||(39421161-39421313)
chr2 (54-183)||(39223764-39223893)
chr2 (38-190)||(39188738-39188890)
chr2 (42-190)||(39604362-39604510)
[»] chr8 (3 HSPs)
chr8 (53-190)||(44730161-44730298)
chr8 (28-190)||(44949869-44950031)
chr8 (31-190)||(45343011-45343170)
[»] chr5 (2 HSPs)
chr5 (28-184)||(17060698-17060854)
chr5 (29-184)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (28-190)||(5849-6011)
[»] chr7 (1 HSPs)
chr7 (53-190)||(19808949-19809083)
[»] chr6 (1 HSPs)
chr6 (126-183)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 44624998 - 44624828
Alignment:
Q  20 cttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 119  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  120 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 44624828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 44615605 - 44615455
Alignment:
Q  40 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 139  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  140 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctct 44615455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 39153266 - 39153105
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| |||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctct 39153105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 39472763 - 39472891
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  153 gctttcaactcacgcgctagcttcaatgc 181  Q
     ||||||| ||| | || |||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 39138826 - 39138692
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  153 gctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||||||  | | | ||||||||||||||||| |||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctct 39138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 39387469 - 39387624
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 184  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 39387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 39371297 - 39371163
Alignment:
Q  56 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 155  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  156 ttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    ||||  ||| | |||||||||||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctct 39371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 39216864 - 39216703
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| |||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctct 39216703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 39396627 - 39396788
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| |||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctct 39396788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 39205742 - 39205871
Alignment:
Q  54 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 153  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  154 ctttcaactcacgcgctagcttcaatgctt 183  Q
    ||||||| |||   ||||||||||||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctt 39205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 39196485 - 39196640
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 184  Q
    ||||||||||| || ||||||||||||||||| |||   |||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttc 39196640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 39413004 - 39413159
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 184  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 39380496 - 39380630
Alignment:
Q  56 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 155  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  156 ttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    ||||| ||| | |||||| ||| |||||| |||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctct 39380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 44895114 - 44895236
Alignment:
Q  61 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 160  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  161 ctcacgcgctagcttcaatgctt 183  Q
     | | | ||||||||||||||||    
T  44895214 tttatgtgctagcttcaatgctt 44895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  54 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 153  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  154 ctttcaactcacgcgctagcttcaatg 180  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 39421161 - 39421313
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 184  Q
    |||||||||||||||| ||| ||||||||||| ||| | || ||||||||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttc 39421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 39223893 - 39223764
Alignment:
Q  54 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 153  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  154 ctttcaactcacgcgctagcttcaatgctt 183  Q
    |||| || |||   ||||||||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctt 39223764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 39188738 - 39188890
Alignment:
Q  38 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 137  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  138 ttttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||||||||||||||||||| || ||| | ||||| |||| ||| || |||||    
T  39188838 ttttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctct 39188890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 39604510 - 39604362
Alignment:
Q  42 aaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatttt 141  Q
    ||||||||||  |||||||||||||| ||| ||| |  |||||||||||| |||| ||  | |||||| || |||||  |||   ||||||| |||||||    
T  39604510 aaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtatttt 39604411  T
Q  142 ctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |  | ||||||| |||||| | | | |||||||||| |||||| |||||    
T  39604410 cacttatgttagatttcaaattaagtgctagcttcattgcttcttctct 39604362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 44730298 - 44730161
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  153 gctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||||||||||| | ||||||||||| |||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctct 44730161  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 44949869 - 44950031
Alignment:
Q  28 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 127  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  128 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| |||||||||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctct 44950031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 45343170 - 45343011
Alignment:
Q  31 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 130  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  131 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| |||||    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctct 45343011  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 17060854 - 17060698
Alignment:
Q  28 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 127  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  128 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 184  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 33562496 - 33562341
Alignment:
Q  29 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 128  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  129 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 184  Q
      |||||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttc 33562341  T

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Target: scaffold0283 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 5849 - 6011
Alignment:
Q  28 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 127  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  128 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| |||||||||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctct 6011  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 19809083 - 19808949
Alignment:
Q  53 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 152  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  153 gctttcaactcacgcgctagcttcaatgcttcatctct 190  Q
    |||||||| ||| | ||||||||||||| ||| |||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctct 19808949  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 16114477 - 16114420
Alignment:
Q  126 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 183  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctt 16114420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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