View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_566 (Length: 202)

Name: NF11386A_low_566
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_566
NF11386A_low_566
[»] chr2 (2 HSPs)
chr2 (144-196)||(10973530-10973582)
chr2 (149-196)||(2973408-2973455)
[»] chr6 (1 HSPs)
chr6 (144-196)||(30140922-30140974)
[»] chr4 (4 HSPs)
chr4 (145-196)||(12355328-12355379)
chr4 (148-196)||(27066334-27066382)
chr4 (148-196)||(27087435-27087483)
chr4 (144-196)||(54027686-54027738)
[»] chr8 (1 HSPs)
chr8 (148-196)||(10601198-10601246)
[»] chr5 (3 HSPs)
chr5 (144-196)||(29754938-29754990)
chr5 (145-192)||(23976637-23976684)
chr5 (148-193)||(26683584-26683629)
[»] chr1 (3 HSPs)
chr1 (148-196)||(16678732-16678780)
chr1 (148-196)||(47726367-47726415)
chr1 (148-196)||(47747673-47747721)
[»] chr3 (1 HSPs)
chr3 (151-196)||(12370776-12370821)
[»] scaffold0650 (1 HSPs)
scaffold0650 (145-196)||(288-339)


Alignment Details
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 10973530 - 10973582
Alignment:
Q  144 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10973530 gagggaaaagtgtttaatgcatttcattagtaatcaaagtttcaatacaattg 10973582  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 2973408 - 2973455
Alignment:
Q  149 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||    
T  2973408 aaaagtgcttatagcatttcattagtaatcaaagtttcaatacaattg 2973455  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 30140922 - 30140974
Alignment:
Q  144 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  30140922 gagggaaaagtgcttatagcatttcattaataatcaaagtttcaatacaattg 30140974  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 12355379 - 12355328
Alignment:
Q  145 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  12355379 agggaaaggtgcttaaagcatttcattaataatcaaagtttcaatacaattg 12355328  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 27066334 - 27066382
Alignment:
Q  148 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||| |||||||  ||||||||||| |||||||||||||||||||||||    
T  27066334 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattg 27066382  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 27087435 - 27087483
Alignment:
Q  148 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||| |||||||  ||||||||||| |||||||||||||||||||||||    
T  27087435 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattg 27087483  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 54027686 - 54027738
Alignment:
Q  144 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||| |||||||   |||||||||| ||||||||||||||||| |||||    
T  54027686 gagggaaatgtgcttatatcatttcattaataatcaaagtttcaatataattg 54027738  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 10601246 - 10601198
Alignment:
Q  148 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  10601246 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatataattg 10601198  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 29754938 - 29754990
Alignment:
Q  144 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||| |||||||  ||||||||||| |||||||||||||||||||||||    
T  29754938 gagggaaaggtgcttatagcatttcattaataatcaaagtttcaatacaattg 29754990  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 23976684 - 23976637
Alignment:
Q  145 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaataca 192  Q
    |||||||||||||||  |||| |||||| |||||||||||||||||||    
T  23976684 agggaaaagtgcttatagcatatcattaataatcaaagtttcaataca 23976637  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 26683629 - 26683584
Alignment:
Q  148 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaa 193  Q
    ||||||||||||  | ||||||||||||||| ||||||||||||||    
T  26683629 gaaaagtgcttatagaatttcattagtaatcgaagtttcaatacaa 26683584  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 16678732 - 16678780
Alignment:
Q  148 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  16678732 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatccaattg 16678780  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 47726415 - 47726367
Alignment:
Q  148 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  47726415 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattg 47726367  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 47747721 - 47747673
Alignment:
Q  148 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  47747721 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattg 47747673  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 12370776 - 12370821
Alignment:
Q  151 aagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||    
T  12370776 aagtgcttatagcattttattagtaatcaaagtttcaatacaattg 12370821  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 288 - 339
Alignment:
Q  145 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattg 196  Q
    |||||||||||||||    ||||||||||||||||||| |||||||||||||    
T  288 agggaaaagtgcttataatatttcattagtaatcaaagcttcaatacaattg 339  T

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