View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_57 (Length: 410)
Name: NF11386A_low_57
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 49213510 - 49213132
Alignment:
| Q |
13 |
agaaagaagaacaaggcaggtgaccggcatatacaatcgaagtcatcaaaggacataaaaagatagaatataaagagtttcagtacaataccaaaaaagg |
112 |
Q |
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| T |
49213510 |
agaaagaagaacaaggcaggtgaccggcatatacaatcgaagtcatcaaaggacataaaaagatagaatgtaaagagtttcagtacaataccaaaaaagg |
49213411 |
T |
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| Q |
113 |
aaaatactacttatcgcgaaaacaagcctcacgaaattgtacacaacatgtgattggttgtttcctatcactcattcctccaatgtatccgacaaataca |
212 |
Q |
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| T |
49213410 |
aaaatactacttatcgcgaaaacaagcctcacgaaattgtacacaacatgtgattggttgtttcctatcactcattcctccaatgtatccgacaaataca |
49213311 |
T |
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| Q |
213 |
gaactaacatttccaccacaaaaagtatcacattgatatttgtgaatttcgtgatggaaatgctttgtactaaatagcatttttgcccaaaaattacaat |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49213310 |
gaactaaaatttccaccacaaaaagtatcacattgatatttgtgaatttcgtgatggaaatgctttgtactaaatagcatttttgcccaaaaattacaat |
49213211 |
T |
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| Q |
313 |
taagtatttttgatgctgcaaatgctgcttcaagaagatattgtaccatttctttctagtcacaagtgagatagaaaac |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49213210 |
taagtatttttgatgctgcaaatgctgcttcaagaagatattgtaccatttctttctagtcacaagtgagatagaaaac |
49213132 |
T |
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