View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_58 (Length: 410)
Name: NF11386A_low_58
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 40542703 - 40543095
Alignment:
| Q |
12 |
aagaattgttaaaaagagaagccccatttcttttcaaaaaattgttttggtctagtaactagtttgctcgtgaaagttttaaactccagaatatttatca |
111 |
Q |
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| T |
40542703 |
aagaagtgttaaaaagagaagcccaattttttctcaaaatattgttttggtctagtaactagtttgctcgtgaaagttttaaactccaaaatatttatca |
40542802 |
T |
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| Q |
112 |
aattattcatgttcttttttattctcttttatttcatgtgtcaatgagagaggtgaatgatgcaatttattccatgccttcctataaagctctagatctt |
211 |
Q |
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| T |
40542803 |
aattattcatgttcttttttattctcttttatttcatgtgtcaatgagagaggtgaatgatgcaatttattccatgccttcctataaagctctagatctt |
40542902 |
T |
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| Q |
212 |
gatggatttcaacccattttacttcttatatatatgtagatcgtagggagttatattgtttgaaagcttgttttggagtgttttaatattggtattatcc |
311 |
Q |
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| T |
40542903 |
gatg-atttcaacccattttacttcttatatatatgtagatcgtagggagttatattgtttgaaagcttgttttggagtgttttaatattggtattatcc |
40543001 |
T |
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| Q |
312 |
ctcctaagttgacatagactcttattgttccaattcctaagagtaataaacctcaaagtttgatggcctttaggacgattatcctttataacat |
405 |
Q |
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| T |
40543002 |
ctcctaagttgacatagactcttattgttccaattcctaagagtaataaacctcaaagtttgatggcctttaggacgactatcctttataacat |
40543095 |
T |
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