View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_6 (Length: 578)
Name: NF11386A_low_6
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 30 - 556
Target Start/End: Complemental strand, 1573477 - 1572951
Alignment:
| Q |
30 |
cacttgatcatagaaagtctttgaagcatagtatattccatagtccaaaagcaacccaatacccacgtcctcaagtgggttatcaggaatccatgtatca |
129 |
Q |
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| T |
1573477 |
cacttgatcatagaaagtctttgaagcatagtatattccatagtccaaaagcaacccaatacccacatcctcaagtgggttatcaggaatccatgtatca |
1573378 |
T |
|
| Q |
130 |
ttttcaataaaataagtcccaattgcataactatccactcttgtatcatccaaactagcctttaacacatgcttaacatgtggtccatttactgatgtgt |
229 |
Q |
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| T |
1573377 |
ttttcaataaaataagtcccaattgcataactatccactcttgtatcatccaaactagcctttaacacatgcttaacatgtggtccatttactgatgtgt |
1573278 |
T |
|
| Q |
230 |
ccaaaccatttgacccgtttattgaaaccgggtaaaagtccacacattcccacatacccgtacccggaaccgcatgtaagtagttatcatttagttcaaa |
329 |
Q |
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| T |
1573277 |
ccaaaccatttgacccgtttatagaaaccgggtaaaaatccacacattcccacatacccgtacccggaaccgcatgtaagtagttatcatttagttcaaa |
1573178 |
T |
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| Q |
330 |
atttataaaatttgtggttttgtaaaccaatgaaagacctgtttgtcctttctttgatccaattaggactctccattttccatctggcccgatccaaccg |
429 |
Q |
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| T |
1573177 |
atttataaaatttgtggttttgtaaaccaatgaaagacctgtttgtcctttctttgatccaattaggactctccattttccatctggcccgatccaacca |
1573078 |
T |
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| Q |
430 |
gtggttggatcgcggaaatcctttgaaccaatgtcaggtgggggctccaagattgggttatttgcatatttaatccaatcaaggagaagggggtcagata |
529 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1573077 |
gtggttggatcgcggaaatcctttgaaccaatgccaggtgggggctctaagattgggttatttgcatatttaacccaatcaaggagaagggggtcagata |
1572978 |
T |
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| Q |
530 |
agttggccggatgagcaagattttgca |
556 |
Q |
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| T |
1572977 |
agttggccggatgagcaagattttgca |
1572951 |
T |
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