View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_60 (Length: 409)
Name: NF11386A_low_60
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 31251750 - 31252154
Alignment:
| Q |
1 |
gaaacgggagatttcatattaaataatnnnnnnnnnnntattaaaccgactcttcc-tcaaaaaaataacattaaacctgttattttacatactaagtca |
99 |
Q |
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| T |
31251750 |
gaaacgggagatttcatattaaataataaaaaaaaaaatattaaaccgactcttccctcaaaaaaataacattaaacctgttattttacatactaagtca |
31251849 |
T |
|
| Q |
100 |
tnnnnnnnnnnnnnncaataaaatgatgtgtttcttttctagtatttgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttatta |
199 |
Q |
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| |||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31251850 |
taaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattctagatgtcattcatacacaaaagtggtgatttatta |
31251949 |
T |
|
| Q |
200 |
ggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaa |
299 |
Q |
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| T |
31251950 |
ggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaa |
31252049 |
T |
|
| Q |
300 |
tgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatg |
399 |
Q |
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| T |
31252050 |
tgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatg |
31252149 |
T |
|
| Q |
400 |
gattt |
404 |
Q |
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||||| |
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| T |
31252150 |
gattt |
31252154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 115 - 404
Target Start/End: Complemental strand, 25815278 - 25814990
Alignment:
| Q |
115 |
caataaaatgatgtgtttcttttctagtatttgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
214 |
Q |
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|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25815278 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
25815179 |
T |
|
| Q |
215 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
25815178 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtcattttatacatggtaatgaaatgagataagaatcaa |
25815079 |
T |
|
| Q |
315 |
ttagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatggattt |
404 |
Q |
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| T |
25815078 |
-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaatttgtaatgcaagagagatggattt |
25814990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 23052912 - 23052768
Alignment:
| Q |
260 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
359 |
Q |
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|||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
|
| Q |
360 |
attatcagggccaacattaatttgtgatgcaggagagatggattt |
404 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagatggattt |
23052768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 23052961 - 23052912
Alignment:
| Q |
179 |
cacaaaagtggtgatttattaggggtagcattccaaaactgcataaaactt |
229 |
Q |
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|||| |||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
23052961 |
cacacaagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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