View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_65 (Length: 402)
Name: NF11386A_low_65
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_65 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Original strand, 34552197 - 34552595
Alignment:
| Q |
7 |
aattttagtcattacttaacttcatacaaaacaatctaatccatcaataacataaaaagtacgcacatttcgtttggaaaatctaatatgatagaaaatg |
106 |
Q |
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| T |
34552197 |
aattatagtcattacttaacttcataccaaacaatctaatcca-caataacataaaaagtacgcacatttcgtttgggagatctaatatgatagaaaatg |
34552295 |
T |
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| Q |
107 |
aagtaacctaaatacacatcgcataaggtaatgtagcaatgatacttaaagtagaa----taaataaaagtacccatgtgagtttcttccagctcaacac |
202 |
Q |
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| T |
34552296 |
aagtaacctaaatacacatcgcataaggtaatgtagcaatgatacttaaagtagaagacatatataaaagtacccatgtgagtttcttccagctcaacac |
34552395 |
T |
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| Q |
203 |
tcaatcattaaaccacattgatattttcttaacgaattaaagcttgctaagtgaattgctcaatcctgaaaattcccaaagtttatgacttgctcgctct |
302 |
Q |
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| T |
34552396 |
tcaatcattaaaccacattgatattttcttaacgaattaaagcttgctaagtgaattgctcaatcctgaaaatttccaaagtttatgacttgctcgctct |
34552495 |
T |
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| Q |
303 |
cagctaactcctggttcattgagccaatttgccttgtgttcactttcaatctctatgacttccttactcccaacttgtgggatcactaagagaatctctg |
402 |
Q |
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| T |
34552496 |
caactaactcctagttcattgagccaatttgccttgtgttcactttcaatctctatgaattccttgctcccaactcgtgggatcactaagcgaatctctg |
34552595 |
T |
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