View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_66 (Length: 396)
Name: NF11386A_low_66
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 526998 - 527188
Alignment:
| Q |
1 |
ttaatactccacatcaaaaacacggcaagaacatgtatcagaataggtcaacaaggacaagagaagaagcaaaccaaatgaacatggaggctacttcaag |
100 |
Q |
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| T |
526998 |
ttaatactccacatcaaaaacacagcaagaacatgtatcagaataggtcaacaaggacaagagaagaagcaaaccaaatgaacatggaggctccttcaag |
527097 |
T |
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| Q |
101 |
tgatgatgaccaagaatccaaccaacgtcgcagaaaaaggacatatcgccgccacacacagcaacaaattgatgaaatggatacgtaggaacca |
194 |
Q |
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| T |
527098 |
---tgatgaccaagaatccaaccaacgtcgcagaaaaaggacatatcgccgccacacacagcaacaaattgatgaaatggatacgtaggaacca |
527188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 527249 - 527381
Alignment:
| Q |
253 |
ttgctccatattttttgaacttggtttt-gtcatcagtttcttcaagcagtgtcctaatcctaatgatgctcagagaagagagctgagccttcggactgg |
351 |
Q |
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| T |
527249 |
ttgctccatattttttgaacttggtttttgtcatcagcttcttcaagcagtgtcctaatcctaatgatgctcagagaagagagctgagccttcggactgg |
527348 |
T |
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| Q |
352 |
gttagacccaacgcaaatcaagttttggtttca |
384 |
Q |
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| T |
527349 |
gttagacccaacgcaaatcaagttttggtttca |
527381 |
T |
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