View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_73 (Length: 391)
Name: NF11386A_low_73
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_73 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 41658521 - 41658904
Alignment:
| Q |
1 |
aaagcaaatcatggataaatatatttcttagttgcatataggatgccaatatgcatgaattttctcctctgaagtagacacaagcatcaggtgatccttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
41658521 |
aaagcaaatcatggataagtatatttcttacttgcatacaggaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttc |
41658620 |
T |
|
| Q |
101 |
cactccaatactgactcggcatgaggactaaaactagtggccaacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggta |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658621 |
cactccaatactgactcagcatgaggactaaaactagtggccaacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggta |
41658720 |
T |
|
| Q |
201 |
attcaaagaactagtggacagaagctttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcact |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658721 |
attcaaagaacttgtggacagaagctttcagatcatcgacggcattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcact |
41658820 |
T |
|
| Q |
301 |
aaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgacgggtattgattgctccgagtcttggagaataat |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
41658821 |
aaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgatgggtattgattgctccgagtcttggggaataat |
41658904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 13845711 - 13845779
Alignment:
| Q |
218 |
acagaagctttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccat |
286 |
Q |
| |
|
||||||||||| |||||||| | |||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
13845711 |
acagaagctttgagatcatcaagaacattaataggcatcccatgattcacaatttggaagaaaccccat |
13845779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 13845792 - 13845824
Alignment:
| Q |
329 |
tcccagtttgtgaaatcaatgacgggtattgat |
361 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
13845792 |
tcccagtttgtgaaatcaatgatgggtattgat |
13845824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 45 - 363
Target Start/End: Original strand, 14629891 - 14630209
Alignment:
| Q |
45 |
gccaatatgcatgaattttctcctctgaagtagacacaagcatcaggtgatccttccactccaatactgactcggcatgaggactaaaactagtggccaa |
144 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| || || ||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14629891 |
gccaatatgcatgaattttctcttctgaagtatacacaagctgcaagtaatccttccactccaacactgactcagcatgagggctaaaactagtggccaa |
14629990 |
T |
|
| Q |
145 |
cctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgatgaca |
244 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| | ||| |
|
|
| T |
14629991 |
cctcacaacttcaggaggtgaattctctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacagaagctttcaaatcatcaaggacg |
14630090 |
T |
|
| Q |
245 |
ttaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaat |
344 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || | | ||| |||||||||||||||| |
|
|
| T |
14630091 |
ttaatgggtataccatgattcacaatttggaagaaacccaaattagttgcagcactaaaaattgaatcttgaacatctgggtcatcccagtttgtgaaat |
14630190 |
T |
|
| Q |
345 |
caatgacgggtattgattg |
363 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
14630191 |
caatgatgggtattgattg |
14630209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 27 - 363
Target Start/End: Original strand, 14644941 - 14645274
Alignment:
| Q |
27 |
cttagttgcatataggatgccaatatgcatgaattttctcctctgaagtagacacaagcatcaggtgatccttccactccaatactgactcggcatgagg |
126 |
Q |
| |
|
|||| ||||||| || | |||||||||||||||||||||| ||||||||| |||||||| || || |||||||||||||||||||||||| ||| |||| |
|
|
| T |
14644941 |
cttacttgcatacagcaggccaatatgcatgaattttctcttctgaagtatacacaagccgcaagtaatccttccactccaatactgactcagcaagagg |
14645040 |
T |
|
| Q |
127 |
actaaaactagtggccaacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagct |
226 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14645041 |
gctaaaactggtggacaacctcacaacttcaggtggtgaat---ctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacagaagct |
14645137 |
T |
|
| Q |
227 |
ttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgt |
326 |
Q |
| |
|
|||| |||||| | ||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || | | || |
|
|
| T |
14645138 |
ttcaaatcatcaaggacgttaatgggtataccatgattcacaatttggaagaaacccaacttagttgcagcactaaaaattgaatcttgaacatctgggt |
14645237 |
T |
|
| Q |
327 |
cttcccagtttgtgaaatcaatgacgggtattgattg |
363 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
14645238 |
catcccagtttgtgaaatcaatgatgggtattgattg |
14645274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University