View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_75 (Length: 388)
Name: NF11386A_low_75
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_75 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 77 - 359
Target Start/End: Original strand, 45743709 - 45743991
Alignment:
| Q |
77 |
ctaactcaatcacacaaaaccgatcctaactcaatcacacaaaaccgacttaaaaggaggattgtttaagctttataagtcctatttatgattactctat |
176 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45743709 |
ctaactcaatcacacaaaaccaatcctaactcaatcacacaaaaccaacttaaaaggaggattgtttaagctttataagtcctatttatgatttctctat |
45743808 |
T |
|
| Q |
177 |
agctaacgtatgatttggacttaaacggataagtaaaacttacattagcacgaaggagagaaacacaatttccttgcccttgtcctttggcaaagtgaac |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45743809 |
agctaacgtatgatttggacttaaacggataagtaaaacttacattagcacgaaggagagaaacacaatttccttgcccttgtcctttggcaatgtgaac |
45743908 |
T |
|
| Q |
277 |
catctcttgcatgattccaccattagacaaaaggtccccctcgcttctatgcctttcatcacgcagccactcaaacagtcttt |
359 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
45743909 |
catctcttgcatgggtccaccattagacaaaatgtcccactcgcttctaagcctttcatcacgcagaaaatcaaacagtcttt |
45743991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 45743618 - 45743729
Alignment:
| Q |
11 |
caaagattcctggttttagttgtattcatattcatatgaaatcaacatgcaaacaatagtctggcgctaactcaatcacacaaaaccgatcctaactcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45743618 |
caaagattcctggttttagttgtattcatattcatatgaaatcaacatgcaaacaatagtctgacgctaactcaatcacacaaaaccgatcctaactcaa |
45743717 |
T |
|
| Q |
111 |
tcacacaaaacc |
122 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45743718 |
tcacacaaaacc |
45743729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 12322858 - 12322952
Alignment:
| Q |
211 |
aaaacttacattagcacgaaggagagaaacacaatttccttgcccttgtcctttggcaaagtgaaccatctcttgcatgattccaccattagaca |
305 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||| || || || |||||||||| |||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
12322858 |
aaaacttacactagcacggagaagagaaacacagttgccatgatcttgtcctttagcaatatgagccatctcttgcataggaccaccattagaca |
12322952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University