View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_76 (Length: 388)

Name: NF11386A_low_76
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_76
NF11386A_low_76
[»] chr1 (1 HSPs)
chr1 (23-383)||(6538609-6538968)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 383
Target Start/End: Complemental strand, 6538968 - 6538609
Alignment:
Q  23 cattgaatagtgaaagattagtgaagacttgaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgcggctcatgtcatgagtgtaag 122  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6538968 cattgaatagtgacagattagtgaagacttcaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgtggctcatgtcatgagtgtaag 6538869  T
Q  123 tcataactcataacatatacttcctccgtaataaaaaaggtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttnnnnnnntg 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  6538868 tcataactcataacatatacttcctccgtaataaaaaaagtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttaaaaaaatg 6538769  T
Q  223 gtcacttacagtttacattgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaatgtagt 322  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6538768 gtcacttacag-atacattgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagt 6538670  T
Q  323 agcagagtaattgattggtgatagatgcatgaagttttacatagagagaaagttgttttgt 383  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6538669 agcagagtaattgattggtgatagatgcatgaagttgtacatagagagaaagttgttttgt 6538609  T

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