View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_77 (Length: 385)
Name: NF11386A_low_77
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 379
Target Start/End: Complemental strand, 10436422 - 10436054
Alignment:
| Q |
12 |
atagatggatatataagggatcaaaggctatggttgtatccaaatccaatgaaacatctttggagaaaatgattcatcaaggatcatccaccacctgatt |
111 |
Q |
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| T |
10436422 |
atagatggatatataagggatcaaaggctatggttgtatccaaatccaatgaaacatctttggagaaaatgattcatcaaagatcatccaccacctgatt |
10436323 |
T |
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| Q |
112 |
tggtctagttagtgaatatggcttctctctttgtggagccctgcatgcaattggaaggacttctttaccaaagcatcacttcaacaacgtagaccatagg |
211 |
Q |
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| T |
10436322 |
tggtctagttagtgaatatggcttctctctttgtggagccctacatgcaattggaaggacttctttaccaaagcatcacttcaacaacatagaccatagg |
10436223 |
T |
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| Q |
212 |
ctagtgaatttggattattttccagctcatatgagatatttcatgttctcaagttgttgtaaaatatgtgactactcaaataccaacaaggcaatcttat |
311 |
Q |
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| T |
10436222 |
ctagtgaatttggattattttccagctcatatgagatatttcatgttctcaagttgttgtaaaatatgtgactactcaaataccaacaaggcaatcttat |
10436123 |
T |
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| Q |
312 |
aaattatcacnnnnnnncatgggatc--atacttgtggacccaatacatatatatatctttggtgaaaaa |
379 |
Q |
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| T |
10436122 |
aaattatcactttttttcatgggatcatatactcgtggacccaacac-tatatatatctttggtgaaaaa |
10436054 |
T |
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