View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_80 (Length: 380)
Name: NF11386A_low_80
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 31172676 - 31173050
Alignment:
| Q |
13 |
agatgcaaaaaatcccaggcaaatccatgaagcacaggtgaagttatgagcaaatgaatatagcttaaaagcacacctaaaaggccaaatcacacaataa |
112 |
Q |
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| T |
31172676 |
agatgcaaaaaatcccaggcaaatccatgaagcacaggtgaagttatgagcaaatgaatatagcttaaaagcacacctaaaaggccaaatcacacaataa |
31172775 |
T |
|
| Q |
113 |
cattccttcttaattattttccaccgctcaattaatcaacaccaaccgtcgatagcaggtcaatcgaagggctcatattcaaactggaagaaagatatcg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31172776 |
cattccttcttaattattttccaccgctcaattaatcaacaccaaccgtcgatagcaggtcaatcgaagggctcatattcaaactggaagaaagatatcg |
31172875 |
T |
|
| Q |
213 |
atccttgtcgggttccctcaaccaatgagaattaagtaacagaatattatttcactatttaaaccataaaattccatcatcttc-------------tcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31172876 |
atccttgtcgggttccctcaaccaatgagaattaagtaacagaatattatttcactatttaaaccataaaattccatcatcttctctcacattcaattcc |
31172975 |
T |
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| Q |
300 |
cactttcaacaaactctttctacgtatcaatttgttttcattcatacttcaattctgttaacatggccacagaag |
374 |
Q |
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| T |
31172976 |
cactttcaacaaattctttctacgtatcaatttgttttcattcatacttcaattctgttaacatggccacagaag |
31173050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 31227791 - 31227507
Alignment:
| Q |
13 |
agatgcaaaaaatcccaggcaaatccatgaagcacaggtgaagttatgagcaaatgaatatagcttaaaagcacacctaaaagg-----------ccaaa |
101 |
Q |
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|||| |||||||||||||||||||||||||| ||||| | ||||||||| |||||||| |||||||||||||| | |||| ||||| |
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| T |
31227791 |
agattcaaaaaatcccaggcaaatccatgaaccacagctcaagttatgaataaatgaatccagcttaaaagcacagccaaaacaaccaaacacccccaaa |
31227692 |
T |
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| Q |
102 |
tcacacaataacattccttcttaattattttccaccgctcaattaatcaacaccaaccgtcgatagcaggtcaatcgaagggctcatattcaaactggaa |
201 |
Q |
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||| ||| ||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||| || | ||||||||||||| |||||||| ||| |
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| T |
31227691 |
tcatacagtaacattccttcttaattattctccac-gctcaatcaatcaacaacaaccgtcgataacatccccatcgaagggctcacattcaaacaagaa |
31227593 |
T |
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| Q |
202 |
gaaagatatcgatccttgtcgggttccctcaaccaatgagaattaagtaacagaatattatttcactatttaaaccataaaattcc |
287 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||| |
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| T |
31227592 |
aaaagatatcgatccttgtcgggttctctcaaccaatgagaattaagtaaccgtatattatttcactatttaaatcatcaaattcc |
31227507 |
T |
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