View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_85 (Length: 376)
Name: NF11386A_low_85
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_85 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Original strand, 38251606 - 38251981
Alignment:
| Q |
3 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38251606 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
38251705 |
T |
|
| Q |
103 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagta-gcataga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38251706 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatgcataga |
38251805 |
T |
|
| Q |
202 |
acaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38251806 |
acacccaaaaaaaacaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
38251905 |
T |
|
| Q |
301 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38251906 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
38251981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Complemental strand, 43157936 - 43157561
Alignment:
| Q |
3 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157936 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
43157837 |
T |
|
| Q |
103 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagta-gcataga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43157836 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatctgagatatacagaaaattaccttgaaccagcattgaagtatgcataga |
43157737 |
T |
|
| Q |
202 |
acaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157736 |
acacccaaaaaaaacaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
43157637 |
T |
|
| Q |
301 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157636 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
43157561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 38251996 - 38252058
Alignment:
| Q |
315 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38251996 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggct |
38252058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 43157546 - 43157484
Alignment:
| Q |
315 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43157546 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggct |
43157484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Complemental strand, 11475360 - 11474985
Alignment:
| Q |
3 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11475360 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
11475261 |
T |
|
| Q |
103 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagta-gcataga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11475260 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgatatatacagaaaattaccttgaaccagcattgaagtatgcataga |
11475161 |
T |
|
| Q |
202 |
acaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11475160 |
acacccaaaaaaaacaccagattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
11475061 |
T |
|
| Q |
301 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11475060 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
11474985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Complemental strand, 11503400 - 11503025
Alignment:
| Q |
3 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11503400 |
gaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaacagtcc |
11503301 |
T |
|
| Q |
103 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagta-gcataga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11503300 |
acaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatctgatatatacagaaaattaccttgaaccagcattgaagtatgcataga |
11503201 |
T |
|
| Q |
202 |
acaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11503200 |
acacccaaaaaaaacaccagattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatcca |
11503101 |
T |
|
| Q |
301 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11503100 |
aaaacaaaagaatcaagatttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggct |
11503025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 11474970 - 11474908
Alignment:
| Q |
315 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11474970 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggct |
11474908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 11503010 - 11502948
Alignment:
| Q |
315 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11503010 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggct |
11502948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 18330745 - 18330801
Alignment:
| Q |
282 |
agagttaacacacaatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
338 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| ||||||| ||||| ||||||| |
|
|
| T |
18330745 |
agagttaaaacacaataaaaaaacaaaagcatcaacatttgttgcacacactaaaat |
18330801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 49233782 - 49233810
Alignment:
| Q |
9 |
aaaaccaatatgttgcagctggaacacaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49233782 |
aaaaccaatatgttgcagctggaacacaa |
49233810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 49234353 - 49234381
Alignment:
| Q |
9 |
aaaaccaatatgttgcagctggaacacaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49234353 |
aaaaccaatatgttgcagctggaacacaa |
49234381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University