View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_89 (Length: 373)
Name: NF11386A_low_89
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_89 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 881260 - 880888
Alignment:
| Q |
1 |
tcaaggtgataaagaaagagaggttgaaaaaagagaggttggtgaagcaaatcaagcgcgaagtttcagtgatgcgtctcgttcgccatcctcatatcgt |
100 |
Q |
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| T |
881260 |
tcaaggtgataaagaaagagaggttgaaaaaagagaggttggtgaagcaaatcaagcgcgaagtttcagtgatgcgtctcgttcgccatcctcatatcgt |
881161 |
T |
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| Q |
101 |
tgaactcaaagaagttatggcaacaaagggaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattg |
200 |
Q |
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| T |
881160 |
tgaactcaaagaagttatggcaacaaagggaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattg |
881061 |
T |
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| Q |
201 |
aatgaagatgttgctagaaagtattttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttgaaaccagaaaatc |
300 |
Q |
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| T |
881060 |
aatgaagatgttgctagaaagtactttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttgaaaccagaaaatc |
880961 |
T |
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| Q |
301 |
tactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgccagaacaacgccgaga |
373 |
Q |
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| T |
880960 |
tactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgccagaacaacgccgaga |
880888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 9995110 - 9995043
Alignment:
| Q |
276 |
catcgcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttgg |
343 |
Q |
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| T |
9995110 |
catcgtgatttgaaaccagaaaatcttctgttggatgaaaacggaaatttgaaggtctcagattttgg |
9995043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 343
Target Start/End: Complemental strand, 45268725 - 45268412
Alignment:
| Q |
30 |
aaagagaggttggtgaagcaaatcaagcgcgaagtttcagtgatgcgtctcgttcgccatcctcatatcgttgaactcaaagaagttatggcaacaaagg |
129 |
Q |
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| T |
45268725 |
aaagagaggctgatgaaacaaatcaaacgtgaagtttccgtgatgcgtctcgttcgtcatccacatattgttgagcttaaagaagtaatggctaacaagg |
45268626 |
T |
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| Q |
130 |
gaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttca |
229 |
Q |
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| T |
45268625 |
ctaaagtcttcatggttgttgaatacgtcaaaggaggtgaacttttcgccaaagtcgccaaaggtaaaatggaagaaaatattgccagaaagtattttca |
45268526 |
T |
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| Q |
230 |
acaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaag |
329 |
Q |
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| T |
45268525 |
acaattgatcagtgctgtagatttctgtcatagtcggggagttacacaccgtgatcttaaacccgagaatcttcttttggatgaaaatgaagatcttaag |
45268426 |
T |
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| Q |
330 |
gtctccgattttgg |
343 |
Q |
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| T |
45268425 |
gtatctgattttgg |
45268412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 3294244 - 3294060
Alignment:
| Q |
180 |
aaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatc |
279 |
Q |
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|||||||||||||| ||||| || ||||| |||| |||||||| || ||||| || || |||||||| |||| |||||||||| | ||||| | |||| |
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| T |
3294244 |
aaggtagcaaaaggtaaatttaaggaagaacttgcaagaaagtacttccaacagcttataagtgctgtagattattgccatagtagaggtgtttctcatc |
3294145 |
T |
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| Q |
280 |
gcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgccagaaca |
364 |
Q |
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| T |
3294144 |
gtgatttaaaaccggagaatttattactcgatgaaaacgagaatcttaaagtctccgattttggtctctctgctttgcctgaaca |
3294060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 27006916 - 27006956
Alignment:
| Q |
276 |
catcgcgatttgaaaccagaaaatctactcttggatgaaaa |
316 |
Q |
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| T |
27006916 |
catcgagatttgaaacccgaaaatctactattggatgaaaa |
27006956 |
T |
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