View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_9 (Length: 497)
Name: NF11386A_low_9
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 476
Target Start/End: Complemental strand, 33898287 - 33897812
Alignment:
| Q |
6 |
aacaattcaaatacccaacagaatcttagctaccaccattttggttttnnnnnnnnnntgttagagatatat--cattttttggttttnnnnnnntgtta |
103 |
Q |
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| T |
33898287 |
aacaattcaaatacccaacagaatcttagctaccaccattttggttttaaaaaaaaaatgttagagagatataccattttttggttttaaaaaaatgtta |
33898188 |
T |
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| Q |
104 |
tagagatgatataccnnnnnnnnattgaagtaatgaaacaataaaagtttaagagcatcttcaatgaatattatctaagtaactcacagtgagtacgtat |
203 |
Q |
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| T |
33898187 |
tagagatgatataccttttttttattgaagtaatgaaacaataaaagtttaagagcatcttcaatgaatattatctaagtaactcacagtgagtacgtat |
33898088 |
T |
|
| Q |
204 |
tatatctctcatttagtgatcttcattgtgtcacattcacatttatacaacctagaatatttttactccaacaatacatatttaagcaactcgtaaggta |
303 |
Q |
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| T |
33898087 |
tatatctctcatttagtgatcttcattgtgtcacattcacatttatacaacctagaatatttttactccaacaatacatatttaagcaactcgtaaggta |
33897988 |
T |
|
| Q |
304 |
cgacaactgaattttcttttttgttgactggttgcaaagataatcaatttacattcatatggaacgatggcttaaataagctactttgcaatttgttatg |
403 |
Q |
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| T |
33897987 |
cgacaactgaattttcttttttgttgactggttgcaaagataatcaatttacattcatatggaacgatggcttaaataagctactttgcaatttgttatg |
33897888 |
T |
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| Q |
404 |
gaacttagattgccaccgacg---tgctcaaatggaaacataaattataaaaaagctaaatagtgtttgaaactca |
476 |
Q |
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| T |
33897887 |
gaacttagattgccaccgacgtgctgctcaaatggaaacataaattataaaaaagctaaatagtgtttgaaactca |
33897812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 30364854 - 30364754
Alignment:
| Q |
203 |
ttatatctctcatttagtgatcttcattgtgtcacattcacatttatacaacctagaatatttttactccaacaatacatatttaagcaactcgtaaggt |
302 |
Q |
| |
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|||| |||| |||||| || |||||||||| ||||| ||||||||||||||| | |||||||||||| || |||||||| ||||||||| ||| || |
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| T |
30364854 |
ttatctctcacatttattgtgcttcattgtgccacat-cacatttatacaacccacaatatttttacttaaattgtacatattaaagcaactcataaagt |
30364756 |
T |
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| Q |
303 |
ac |
304 |
Q |
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|| |
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| T |
30364755 |
ac |
30364754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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