View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_90 (Length: 372)
Name: NF11386A_low_90
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 880577 - 880238
Alignment:
| Q |
13 |
gttgggtttgttaggcccattgcattttcaatgagggatttgagtattgaagaaaacaacaaagatatcaatattgatttcaatgagattggtgaagatg |
112 |
Q |
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| T |
880577 |
gttgggtttgttagacccattgcattttcaatgaaggatttgagtattgaagacaacaacaaagatatcaatattgatttcagtgagattggtgaagatg |
880478 |
T |
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| Q |
113 |
atgttgatattcctgaattggtaatggtgaaaccgtctcgtcctttttataatgcattcgagataatttcatcgttgtcacatggttttgatcttaggag |
212 |
Q |
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| T |
880477 |
atgttgatattcctgaattggtaatggtgaaaccgtctcgtcctttttataatgcattcgagataatttcatcgttgtcacatggttttgatcttaggag |
880378 |
T |
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| Q |
213 |
tttatttgagacgaggaagaggttgccatcgatgtttatatcaaagttttcggcttcaacaatgttggagaaacttgaggtgatggcgaagaagttaaat |
312 |
Q |
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| T |
880377 |
tttatttgagacgaggaagaggttgccatcgatgtttatatcaaagttttcggcttcaacaatgttggagaaacttgaggtgatggggaagaagttaaat |
880278 |
T |
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| Q |
313 |
ttgaagataacagggaagaaggagtttgtcgtgagaatgg |
352 |
Q |
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| T |
880277 |
ttgaagataacagggaagaaggagtttgtcgtgagaatgg |
880238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 45267918 - 45267812
Alignment:
| Q |
163 |
aatgcattcgagataatttcatcgttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagtttt |
262 |
Q |
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| T |
45267918 |
aatgcatttgagataatttcatctttatcacatggatttgatctaaggaatttgtttgagacgaggaagagatcgccttcgatgtttatatccaagttgt |
45267819 |
T |
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| Q |
263 |
cggcttc |
269 |
Q |
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| T |
45267818 |
ctgcttc |
45267812 |
T |
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