View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_11 (Length: 467)
Name: NF11386_high_11
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 45025298 - 45024866
Alignment:
| Q |
19 |
aacaacacattgacccaataacatatagaattggatatagctgcccctttacttccaagcttaaattcaaaaaccaaaagccaacacaaaagggtatgaa |
118 |
Q |
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| T |
45025298 |
aacaacacattgacccaataacatatagaattggatatagctgcccctttacttccaagcttaaattcaaaaaccaaaagccaacacaaaagggtatgaa |
45025199 |
T |
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| Q |
119 |
gcaaagctgcaatcccagaagttatcaccattgggaggacaatgttttgtgtttgcaagaacttgagaatgcactggagaggaccatatgcgaacaaact |
218 |
Q |
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| T |
45025198 |
gcaaagctgcaatcccagaagttatcaccattgggaggacaatgttttgtgtttgcaagaacttgagaatgcactggagaggaccatatgcgaacaaact |
45025099 |
T |
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| Q |
219 |
cggtatcagaaacaacgcgtatgaaccagcttccttggatatggctttgtcctgatgcataacaactaaaatttgttttgtatttgcccatatgatggca |
318 |
Q |
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| T |
45025098 |
cggtatcagaaacaacgcgtatgaaccagcttccttggatatggctttgtcctgatgcataacaactaaaatttgttttgtatttgcccatatgatggca |
45024999 |
T |
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| Q |
319 |
aggaatacactcacaattgaaaccacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgt |
418 |
Q |
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| T |
45024998 |
aggaatacactcacaattgaaaccacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgt |
45024899 |
T |
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| Q |
419 |
ccagtgcactagtaattcccatctggtcaaaac |
451 |
Q |
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| T |
45024898 |
ccagtgcactagtaattcccatctgatcaaaac |
45024866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 30471780 - 30471858
Alignment:
| Q |
349 |
atggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcac |
427 |
Q |
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| T |
30471780 |
atggctctctgcaagtgtattcccaccatatggtatttttgtgctccatatgattgaccacaaaatgtttctagtgcac |
30471858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 30437691 - 30437753
Alignment:
| Q |
366 |
tattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
428 |
Q |
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| T |
30437691 |
tattccaaccatatgatactgttgagctccatatgcttgaccacaaaatgtgtctagtgcact |
30437753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 30381373 - 30381453
Alignment:
| Q |
348 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
428 |
Q |
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| T |
30381373 |
catggctctttgtgtgtatatgccaaccatatgatattgctttgctccatatgcttgaccacaaaatgtgtctagtgcact |
30381453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 30502739 - 30502812
Alignment:
| Q |
348 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtcca |
421 |
Q |
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| T |
30502739 |
catggctctttgcatgtgtatgcctagcatgcggtactgctttgcgccatatgactggccacataatgtgtcca |
30502812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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