View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_12 (Length: 449)
Name: NF11386_high_12
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 40768336 - 40767921
Alignment:
| Q |
1 |
cttatagaggatgaggatgaggacttgtcatatcaatagatataccaaacaaagattaaggtataggaacatatcatcagtgataaatacagttccattc |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40768336 |
cttaaagaggatgaggatgaggacttgtcatatcaatagatataccaaacaaagattaaggtataggaacataccatcagtgataaatacagttccattc |
40768237 |
T |
|
| Q |
101 |
catcatcttatttctctcttcaagagtactaactatatccagattctaattcatgagaacttttgtataggaaataaatacttctggttaatacagataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40768236 |
catcatcttatttctctcttcaagagtactaactatatccagattctaattcatgagaacttttgtataggaaatatatacttctggttaatacagataa |
40768137 |
T |
|
| Q |
201 |
agagtaatagtccattgtacatttcaaaattatatgttataacttcagttggaagtctttaatatatatttcttttatagaactgttgcacgaatttctt |
300 |
Q |
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| T |
40768136 |
agagtaatagtccattgtacatttcaaaattatatgttataacttcagttgaaagtctttaatatatatttcttttatagaactgttgcacgaatttctt |
40768037 |
T |
|
| Q |
301 |
ggccaagctcggacgctcttcacagttaggtgtgacctattggcaggttccccatcataattggaaagagtgttgaggcttgatacccagaccgaacctt |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40768036 |
ggccaagctcggacgctcttcacggttaggtgtgacctattggcaggttccccatcataattggaaagagtgttgaggcttgatacccagaccgaacctt |
40767937 |
T |
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| Q |
401 |
gctcttagtgttcttg |
416 |
Q |
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| T |
40767936 |
gctcttagtgttcttg |
40767921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 26173764 - 26173823
Alignment:
| Q |
294 |
atttcttggccaagctcggacgctcttcacagttaggtgtgacctattggcaggttcccc |
353 |
Q |
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| T |
26173764 |
atttcttggccaagctcgggcgctcttcaagattaggtgtgactttttggcaggctcccc |
26173823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 664525 - 664497
Alignment:
| Q |
294 |
atttcttggccaagctcggacgctcttca |
322 |
Q |
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| T |
664525 |
atttcttggccaagctcggacgctcttca |
664497 |
T |
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