View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_13 (Length: 437)
Name: NF11386_high_13
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_13 |
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| [»] scaffold0121 (2 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26370 - 26127
Alignment:
| Q |
1 |
ataaagggggacactccgcactatcatatttatgttgtccttattcaaaacatagaggacatgttgacttccaataactttttagcgcatcatactccca |
100 |
Q |
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| T |
26370 |
ataaagggggacactccgcactatcatatttatgttgtccttattcaaaacatagaggacatattgacttccaataactttttagcgcatcatactccca |
26271 |
T |
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| Q |
101 |
ggggaaggtaatcggagtgatgatttcagggaaaagttagggtccgcttctgatgttgacttcgtcatccactctgcacctccagaagactccattctcc |
200 |
Q |
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| T |
26270 |
ggggaaggtaatcagagtgatgatttcagggcaaagttagggtccgcttctgatgctgactttgtcatccactctgcacctccagaagaccccattctcc |
26171 |
T |
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| Q |
201 |
tgcttcagagtgacacctcaggagttttcttccctccgacctag |
244 |
Q |
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| T |
26170 |
tgcttcagagtgacacctcaggagttttcttccctccgacctag |
26127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 26039 - 25946
Alignment:
| Q |
334 |
ttacaatcttacaactgttatataaattatatggttgatattacaacaatacctctaaaccgtaccttacccaccccccttgacactgcctttg |
427 |
Q |
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| T |
26039 |
ttacaatcttacaactgttatataaattatatggttgatattacaacaatacctctaaaccgtaccttacccaccccccttgacactgcctttg |
25946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1089984 - 1090080
Alignment:
| Q |
1 |
ataaagggggacactccgcactatcatatttatgttgtccttattcaaaacatagaggacatgttgacttccaataactttttagcgcatcatactc |
97 |
Q |
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| T |
1089984 |
ataaagggggacacttcacactatcatatttatgttgtccttattcaagacataaatgacatgttgacttccaataattttttagtgcaccatactc |
1090080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 50521912 - 50521679
Alignment:
| Q |
1 |
ataaagggggacactccgcactatcatatttatgttgtccttattcaaaacatagaggacatgttgacttccaataactttttagcgcatcatactccca |
100 |
Q |
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| T |
50521912 |
ataaagggggatactccgcactatcatgtttatgttgtcctcatccagaacattaaggatatattggctaccaataattttacatttcatcatactctca |
50521813 |
T |
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| Q |
101 |
ggggaaggtaatcggagtgatgatttcagggaaaagttagggtccgcttctgatgttgacttcgtcatccactctgcacctccagaagactccattctcc |
200 |
Q |
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| T |
50521812 |
-gagacggtaaccagaattttgatttcatggcaaagttaggggccacatccaatgctgatttcgtcatccacacaactcctccagaagacctcatcttgc |
50521714 |
T |
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| Q |
201 |
tgcttcagagtgacacctcaggagttttcttccct |
235 |
Q |
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| T |
50521713 |
tgcttcggagtgacgcctcgggagtcttcttccct |
50521679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 28172398 - 28172442
Alignment:
| Q |
146 |
gcttctgatgttgacttcgtcatccactctgcacctccagaagac |
190 |
Q |
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| T |
28172398 |
gcttctgatgttgacttcgccatccactcggctcctccagaagac |
28172442 |
T |
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