View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_high_2 (Length: 785)

Name: NF11386_high_2
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_high_2
NF11386_high_2
[»] chr4 (1 HSPs)
chr4 (18-779)||(46477137-46477900)


Alignment Details
Target: chr4 (Bit Score: 737; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 18 - 779
Target Start/End: Complemental strand, 46477900 - 46477137
Alignment:
Q  18 attactaataccccttcatcactacacgcttagcacgcacattatttgacaaatatataaaacaataaccacattatacagtaatatttcaatcaattaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46477900 attactaataccccttcatcactacacgcttagcacgcacattatttgacaaatatataaaacaataaccacattatacagtaatatttccatcaattaa 46477801  T
Q  118 attaaaataatctaaattccactactatcacagctgtaacaagaatttggtcaaaatcccagaaacaaacaatactaattccatcacaaaggtatttctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477800 attaaaataatctaaattccactactatcacagctgtaacaagaatttggtcaaaatcccagaaacaaacaatactaattccatcacaaaggtatttctc 46477701  T
Q  218 cacatatgaacacagggaaatgtcggaaacacaacccctcgaaactatcaaaatcatatcatattccactttgctatgttccacaaagtctacaacaatc 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46477700 cacatatgaacacaaggaaatgtcggaaacacaacccctcgaaactatcaaaatcatatcatattccactttgctatgttctacaaagtctacaacaatc 46477601  T
Q  318 aaatagcatgaataattaatcaattaattacataattatcagacaattaatcagaatgtacatatttagtctatactacaaaccagatatagat--atat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  46477600 aaatagcatgaataattaatcaattaattacataattatcagacaattaatcagaatgtacatatttagtctatactacaaaccagatatagatatatat 46477501  T
Q  416 tagttattcaatgaatttaaaaagtggtaccgtgaagaagtgcagataagcttccggcgggcatgtaatcataaacaagcaatttttcatctttagagta 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46477500 tagttattcaatgaatttaaaaagtggtaccgtgaagaagtgcagataagcttccggcggccatgtaatcataaacaagcaatttttcatctttagagta 46477401  T
Q  516 gtaaaaagctcttaatggaaccacattatcatgcttaatctttcccaaaatctccatttgcatctcaaactcttttttagtaacaacaacatctttcaac 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477400 gtaaaaagctcttaatggaaccacattatcatgcttaatctttcccaaaatctccatttgcatctcaaactcttttttagtaacaacaacatctttcaac 46477301  T
Q  616 cttttaacaaccaccgttgttccttcttccaacaccgctttatacgaagttccaacacttccctttcctaatacctccgcagaagctctaagcaaatcct 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477300 cttttaacaaccaccgttgttccttcttccaacaccgctttatacgaagttccaacacttccctttcctaatacctccgcagaagctctaagcaaatcct 46477201  T
Q  716 ccaaatcaaaactgtatattccaccgtcgaaaaacaccagtttgttcctctccctctctgcttc 779  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477200 ccaaatcaaaactgtatattccaccgtcgaaaaacaccagtttgttcctctccctctctgcttc 46477137  T

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