View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_high_20 (Length: 409)

Name: NF11386_high_20
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_high_20
NF11386_high_20
[»] chr8 (9 HSPs)
chr8 (7-393)||(29118342-29118725)
chr8 (142-245)||(6223488-6223591)
chr8 (142-245)||(19369822-19369923)
chr8 (142-245)||(19448535-19448636)
chr8 (142-245)||(19532440-19532541)
chr8 (149-213)||(5650863-5650927)
chr8 (150-245)||(5528830-5528923)
chr8 (142-180)||(18767067-18767105)
chr8 (142-219)||(14997733-14997810)
[»] chr1 (6 HSPs)
chr1 (142-243)||(51758842-51758941)
chr1 (142-219)||(39368550-39368627)
chr1 (148-219)||(18308260-18308331)
chr1 (142-180)||(897605-897643)
chr1 (252-317)||(28636882-28636948)
chr1 (143-180)||(28637054-28637091)
[»] chr3 (2 HSPs)
chr3 (142-245)||(28745062-28745164)
chr3 (143-245)||(27259366-27259467)
[»] chr5 (5 HSPs)
chr5 (148-244)||(19985083-19985178)
chr5 (142-245)||(17037630-17037731)
chr5 (254-317)||(31571008-31571072)
chr5 (149-245)||(5078983-5079077)
chr5 (254-317)||(30786246-30786310)
[»] scaffold0069 (1 HSPs)
scaffold0069 (142-245)||(40610-40711)
[»] chr7 (5 HSPs)
chr7 (254-317)||(26619160-26619223)
chr7 (148-214)||(26619021-26619087)
chr7 (148-245)||(26621008-26621104)
chr7 (149-245)||(9242403-9242497)
chr7 (254-315)||(30089716-30089778)
[»] chr6 (5 HSPs)
chr6 (142-245)||(17719635-17719736)
chr6 (149-245)||(12591920-12592014)
chr6 (142-245)||(14669258-14669359)
chr6 (150-219)||(1942681-1942750)
chr6 (251-318)||(23904406-23904474)
[»] chr4 (3 HSPs)
chr4 (142-245)||(1152131-1152232)
chr4 (142-245)||(1684864-1684965)
chr4 (254-317)||(4923690-4923754)
[»] scaffold0684 (1 HSPs)
scaffold0684 (142-245)||(659-760)
[»] chr2 (3 HSPs)
chr2 (142-219)||(24479264-24479341)
chr2 (252-312)||(27151287-27151347)
chr2 (149-245)||(31342635-31342729)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 29118342 - 29118725
Alignment:
Q  7 ctagtgagaatactttgactactttgtttagtccaattataaatggaatgaattaccactcttggggaagttccacggagtggttcatgggaagttcaat 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29118342 ctagtgagaatactatgactactttgtttagtccaattataaatggaatgaattaccactcttggggaagttccacggagtggttcatgggaagttcaat 29118441  T
Q  107 gaagaaaattacatgaatcaatttctgatacaaaagttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacag 206  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||    
T  29118442 gaagaaaattacatgaatcaatttctgatactaaagttaccggtgatacaaaaagtgttacaatgatgtaacattttgcaacacgttttgaatgttacag 29118541  T
Q  207 ataatactgtaaagtgtgacttaaaactcttttgtaacagtgtgtttagtaacattcttcttggtttagcaacaattttaagtgttactagatctcaatt 306  Q
    |||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29118542 ataatactgtaaagtgtgactt-aaactcttttgt-atagcgtgtttagtaacattcttcttggtttagcaacaattttaagtgttactagatctcaatt 29118639  T
Q  307 atattgtagtgcctttagtaatttgaatcatatatgtacgttcctattggttttggtttaggaaaggataaatggatttgatatgat 393  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29118640 atattgtagtgcctttagtaa-ttggatcatatatgtacgttcccattggttttggtttaggaaaggataaatggatttgatatgat 29118725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 6223591 - 6223488
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacac-gttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttg 240  Q
    |||||||||||| |||||| ||||||||| ||||||||| |||  ||||  |||||||||||||| |||||| | |||||||| || ||||||||||| |    
T  6223591 gttactggtgattcaaaaagtgttacaataatgtaacattttgcgacacttttttgaatgttacatataatattataaagtgtaac-taaaactctttag 6223493  T
Q  241 taaca 245  Q
    |||||    
T  6223492 taaca 6223488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 19369822 - 19369923
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||  |||| |||| | |||||||||||||||| |||| ||| || ||||||||||| ||    
T  19369822 gttactagtgatacaaaaagtgttacaataatgtaacat-ttgcgacactttttaattgttacagataatactataaaatgtaac-taaaactctttagt 19369919  T
Q  242 aaca 245  Q
    ||||    
T  19369920 aaca 19369923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 19448636 - 19448535
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||  |||| |||| | |||||||||||||||| |||| | | || ||||||||||| ||    
T  19448636 gttactagtgatacaaaaagtgttacaataatgtaacat-ttgcgacactttttaattgttacagataatactataaaatataac-taaaactctttagt 19448539  T
Q  242 aaca 245  Q
    ||||    
T  19448538 aaca 19448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 19532440 - 19532541
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||  |||| |||| | |||||||||||||||| |||| | | || ||||||||||| ||    
T  19532440 gttactagtgatacaaaaagtgttacaataatgtaacat-ttgcgacactttttaattgttacagataatactataaaatataac-taaaactctttagt 19532537  T
Q  242 aaca 245  Q
    ||||    
T  19532538 aaca 19532541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 5650863 - 5650927
Alignment:
Q  149 gtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatac 213  Q
    |||||||||||| ||||||||| ||||||||| |||  ||||  ||||||||||| |||||||||    
T  5650863 gtgatacaaaaagtgttacaataatgtaacattttgtgacactatttgaatgttatagataatac 5650927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 5528923 - 5528830
Alignment:
Q  150 tgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgtaaca 245  Q
    ||||||||||| ||||||||| |||| | || |||  |||| |||| | ||||||||||||||||||||| ||| || ||||||||||| ||||||    
T  5528923 tgatacaaaaagtgttacaataatgttatat-ttgcgacactttttaactgttacagataatactgtaaaatgtaac-taaaactctttagtaaca 5528830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 18767105 - 18767067
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacat 180  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  18767105 gttactagtgatacaaaaaatgttacaataatgtaacat 18767067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 14997810 - 14997733
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaa 219  Q
    ||||| ||||||||||||| ||||||||| ||||||  | |||  |||  ||||||||||||||| ||||||| ||||    
T  14997810 gttaccggtgatacaaaaagtgttacaataatgtaatgttttgcgacattttttgaatgttacagttaatactataaa 14997733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 51758941 - 51758842
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||| ||||| |||| | |||||||||||||||| |||| ||| || ||||||||||| ||    
T  51758941 gttactggtgatacaaaaagtgttacaataatgtaacat-ttgcaacactttttaattgttacagataatactataaaatgtaac-taaaactctttagt 51758844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 39368550 - 39368627
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaa 219  Q
    ||||| ||||||||||||| ||||||||| ||||||||| |||  |||| |||| |||||||| ||||||||| ||||    
T  39368550 gttaccggtgatacaaaaagtgttacaataatgtaacattttgcgacactttttaaatgttactgataatactataaa 39368627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 18308331 - 18308260
Alignment:
Q  148 ggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaa 219  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||| |||||||||||||| | |||||| ||||    
T  18308331 ggtgatacaaaaagtgttacaataatgtaacattttgtgacactttttgaatgttacaaacaatactataaa 18308260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 897643 - 897605
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacat 180  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  897643 gttactggtgatacaaaaagtgttacaataatgtaacat 897605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 28636948 - 28636882
Alignment:
Q  252 ttagtaacattcttcttggtttagcaacaatttt-aagtgttactagatctcaattatattgtagtg 317  Q
    ||||||||||| |||||| |||||  |||||||| || ||||||||||||| |||||| ||||||||    
T  28636948 ttagtaacatttttcttgatttagttacaatttttaaatgttactagatcttaattatgttgtagtg 28636882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 28637091 - 28637054
Alignment:
Q  143 ttactggtgatacaaaaaatgttacaatgatgtaacat 180  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  28637091 ttactggtgatacaaaaagtgttacaataatgtaacat 28637054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 28745164 - 28745062
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    ||||||| ||||||||||| ||||||||| |||||| || |||  |||| |||||||||||||| |||||||| |||| ||| || ||||||||||| ||    
T  28745164 gttactgatgatacaaaaagtgttacaataatgtaaaattttgcgacactttttgaatgttacaaataatactctaaaatgtaac-taaaactctttagt 28745066  T
Q  242 aaca 245  Q
    ||||    
T  28745065 aaca 28745062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 27259366 - 27259467
Alignment:
Q  143 ttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgta 242  Q
    |||| ||||||||||||| ||||||||| ||||||||| ||   |||| ||||||||||||||||||||||| |||| ||| || |||| |||||| |||    
T  27259366 ttacaggtgatacaaaaagtgttacaataatgtaacattttacgacactttttgaatgttacagataatactctaaaatgtaac-taaagctctttagta 27259464  T
Q  243 aca 245  Q
    |||    
T  27259465 aca 27259467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 19985178 - 19985083
Alignment:
Q  148 ggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgtaac 244  Q
    ||||||||||||| ||||||||| ||||||||| ||| ||||| |||||| | ||||| |||||||| |||| ||| || ||||||||||| |||||    
T  19985178 ggtgatacaaaaagtgttacaataatgtaacattttgcaacactttttgattattacatataatactataaaatgtaac-taaaactctttagtaac 19985083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 17037731 - 17037630
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||  |||| |||| | |||||||||||||||| |||| ||| || ||||||||||| ||    
T  17037731 gttactagtgatacaaaaagtgttacaataatgtaacat-ttgcgacactttttaattgttacagataatactataaaatgtaac-taaaactctttagt 17037634  T
Q  242 aaca 245  Q
    ||||    
T  17037633 aaca 17037630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 31571072 - 31571008
Alignment:
Q  254 agtaacattcttcttggtttagcaacaatttt-aagtgttactagatctcaattatattgtagtg 317  Q
    ||||||||| |||||| ||||  ||||||||| |||||||||||||| |||||||| ||||||||    
T  31571072 agtaacatttttcttgttttaataacaattttcaagtgttactagatgtcaattatgttgtagtg 31571008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 5078983 - 5079077
Alignment:
Q  149 gtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgtaaca 245  Q
    |||||||||||| ||||||||| | ||| ||| ||| ||||| |||||| ||||||||||| |||| |||| ||| || |||||| |||| ||||||    
T  5078983 gtgatacaaaaagtgttacaataaggtaccat-ttgcaacactttttgattgttacagatagtactataaaatgtaac-taaaacactttagtaaca 5079077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 30786310 - 30786246
Alignment:
Q  254 agtaacattcttcttggtttagcaacaatttt-aagtgttactagatctcaattatattgtagtg 317  Q
    ||||||||| |||||| || ||  |||||||| |||||||||||||||| |||||| ||||||||    
T  30786310 agtaacatttttcttgattaagttacaattttcaagtgttactagatcttaattatgttgtagtg 30786246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 40610 - 40711
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| |||||| || ||||||||| |||| |||| |||| | |||||||||||||||| |||| ||| || ||||||||||| ||    
T  40610 gttactagtgatacaaaaagtgttacgataatgtaacat-ttgagacactttttaattgttacagataatactataaaatgtaac-taaaactctttagt 40707  T
Q  242 aaca 245  Q
    ||||    
T  40708 aaca 40711  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 26619160 - 26619223
Alignment:
Q  254 agtaacattcttcttggtttagcaacaattttaagtgttactagatctcaattatattgtagtg 317  Q
    ||||||||| |||||| ||||| |||||||| |||||||||||||| |||||||| ||||||||    
T  26619160 agtaacatttttcttgatttagtaacaatttcaagtgttactagatgtcaattatgttgtagtg 26619223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 26619021 - 26619087
Alignment:
Q  148 ggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatact 214  Q
    ||||||||||||| ||||||||| ||||| ||| |||  |||| |||||||||||||| ||||||||    
T  26619021 ggtgatacaaaaagtgttacaataatgtagcattttgcgacactttttgaatgttacaaataatact 26619087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 26621008 - 26621104
Alignment:
Q  148 ggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgtaaca 245  Q
    |||||||||| || |||| |||| ||||||||| ||   |||| ||||||||||||||||||||||| |||| ||| || |||| |||||| ||||||    
T  26621008 ggtgatacaacaagtgttgcaataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaac-taaagctctttagtaaca 26621104  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 9242403 - 9242497
Alignment:
Q  149 gtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgtaaca 245  Q
    |||||||||||| ||||||||| ||||||||| |||  |||| |||| | ||||| |||||||||| |||| ||| || ||||||||||| ||||||    
T  9242403 gtgatacaaaaagtgttacaataatgtaacat-ttgcgacactttttaattgttatagataatactataaaatgtaac-taaaactctttagtaaca 9242497  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 30089778 - 30089716
Alignment:
Q  254 agtaacattcttcttggtttagcaacaatttt-aagtgttactagatctcaattatattgtag 315  Q
    ||||||||| |||||| ||||| |||| |||| |||||||||||||| |||||||| ||||||    
T  30089778 agtaacatttttcttgatttagtaacagttttcaagtgttactagatgtcaattattttgtag 30089716  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 17719635 - 17719736
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||  |||| |||| | |||||||||||||||| |||| ||| || ||||||||||| ||    
T  17719635 gttactagtgatacaaaaagtgttacaataatgtaacat-ttgcgacactttttaattgttacagataatactataaattgtaac-taaaactctttagt 17719732  T
Q  242 aaca 245  Q
    ||||    
T  17719733 aaca 17719736  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 12592014 - 12591920
Alignment:
Q  149 gtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgtaaca 245  Q
    |||||||||||| ||||||||| ||||||||| |||  |||| |||| | |||||||||||||||| |||| ||| || ||||||||||| ||||||    
T  12592014 gtgatacaaaaagtgttacaataatgtaacat-ttgcgacactttttaattgttacagataatactataaattgtaac-taaaactctttagtaaca 12591920  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 14669258 - 14669359
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||  |||| |||| | ||||||| |||||||| |||| ||| || ||||||||||| ||    
T  14669258 gttactagtgatacaaaaagtgttacaataatgtaacat-ttgtgacactttttaattgttacaaataatactataaaatgtaac-taaaactctttagt 14669355  T
Q  242 aaca 245  Q
    ||||    
T  14669356 aaca 14669359  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 1942750 - 1942681
Alignment:
Q  150 tgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaa 219  Q
    |||||||||| |||||||||| ||||||||| |||  |||  |||| | |||||||||||||||| ||||    
T  1942750 tgatacaaaagatgttacaataatgtaacattttgcgacatattttaattgttacagataatactataaa 1942681  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 23904406 - 23904474
Alignment:
Q  251 tttagtaacattcttcttggtttagcaacaatttt-aagtgttactagatctcaattatattgtagtgc 318  Q
    ||||||||| || |||||  ||||| | ||||||| ||||||||||||||||||||||| |||| ||||    
T  23904406 tttagtaacttttttcttcatttagtagcaattttcaagtgttactagatctcaattatgttgttgtgc 23904474  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 1152232 - 1152131
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||| |||| |||| | |||||||||||||| | |||| ||| || ||||||||||| ||    
T  1152232 gttactagtgatacaaaaagtgttacaataatgtaacat-ttgagacactttttaattgttacagataatattataaactgtaac-taaaactctttagt 1152135  T
Q  242 aaca 245  Q
    ||||    
T  1152134 aaca 1152131  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 1684864 - 1684965
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| |||||||||  |||||||| |||  |||| |||| | |||||||||||||||| |||| ||| || ||||||||||| ||    
T  1684864 gttactagtgatacaaaaagtgttacaatattgtaacat-ttgcgacactttttaattgttacagataatactataaattgtaac-taaaactctttagt 1684961  T
Q  242 aaca 245  Q
    ||||    
T  1684962 aaca 1684965  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 4923690 - 4923754
Alignment:
Q  254 agtaacattcttcttggtttagcaacaatttt-aagtgttactagatctcaattatattgtagtg 317  Q
    ||||||||| |||||| ||||| ||||||||| |||||||||| ||| | |||||| ||||||||    
T  4923690 agtaacatttttcttgatttagtaacaatttttaagtgttactggatgttaattatgttgtagtg 4923754  T

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Target: scaffold0684 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 659 - 760
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgt 241  Q
    |||||| |||||||||||| |||| |||| ||||||||| |||  |||| |||| | ||||| |||||||||| |||| ||| || ||||||||||| ||    
T  659 gttactagtgatacaaaaagtgttccaataatgtaacat-ttgcgacactttttaattgttatagataatactataaaatgtaac-taaaactctttagt 756  T
Q  242 aaca 245  Q
    ||||    
T  757 aaca 760  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 24479341 - 24479264
Alignment:
Q  142 gttactggtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaa 219  Q
    |||| ||||| ||||||||||||||||||  |||||| | ||   |||| |||||||||||| |||||||||| ||||    
T  24479341 gttaatggtggtacaaaaaatgttacaatagtgtaaccttttacgacactttttgaatgttatagataatactataaa 24479264  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 27151287 - 27151347
Alignment:
Q  252 ttagtaacattcttcttggtttagcaacaattttaagtgttactagatctcaattatattg 312  Q
    ||||| ||||| |||||| ||||| |||||||| || | ||||||||| ||||||||||||    
T  27151287 ttagtgacatttttcttgatttagtaacaatttaaattattactagatgtcaattatattg 27151347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 31342635 - 31342729
Alignment:
Q  149 gtgatacaaaaaatgttacaatgatgtaacatattgaaacacgttttgaatgttacagataatactgtaaagtgtgacttaaaactcttttgtaaca 245  Q
    |||||||||||| ||||||||| | ||| ||| ||| ||||| |||||| ||||||||||| |||| |||| ||| || |||||| |||| ||||||    
T  31342635 gtgatacaaaaagtgttacaataaggtaccat-ttgcaacactttttgattgttacagatagtactataaaatgtaac-taaaacactttagtaaca 31342729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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