View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_24 (Length: 381)
Name: NF11386_high_24
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 25 - 373
Target Start/End: Original strand, 8420540 - 8420876
Alignment:
| Q |
25 |
ttgtggtggttactccattcctatttccactcaatttattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatatt |
124 |
Q |
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| T |
8420540 |
ttgtggtggttactccattcctatttccactcaatttattctacttatttgactatgagtgtctccttttgttgctgagtcaaaacactactctcctatt |
8420639 |
T |
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| Q |
125 |
agtcacgttgctcttgtttacttattagcatgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtgatcga |
224 |
Q |
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| T |
8420640 |
aatcacgttgctgttgtttacttattagcatgccttcctaaagataaggaatcca-cctcaactacttcctatagttatagttatgctatgagt----ga |
8420734 |
T |
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| Q |
225 |
ctcaattaaaataaacctagatttcatttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttag |
324 |
Q |
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| T |
8420735 |
ctcaattaaaataaacctagttttcatttctttattattctgattttgttcaaaagggacggttatttgtatatgtatctacctataataattt------ |
8420828 |
T |
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| Q |
325 |
ggataacacacaattaggaagagactgagaacatttcctactctctgct |
373 |
Q |
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| T |
8420829 |
-gataacacacaattaggaagagactgagaacatttcctactctctgct |
8420876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 49171767 - 49171545
Alignment:
| Q |
21 |
cacgttgtggtggttactccattcctatttccactcaatttattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctca |
120 |
Q |
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| T |
49171767 |
cacgttgtggtggttactccattcctatttccactcaatttattctacttatttgactatgagtgactccttttgttgctgagttaaaacactactctcc |
49171668 |
T |
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| Q |
121 |
tattagtcacgttgctcttgtttacttattagcatgccttcctaaagataaggaatccaccctcaactacttcctatagttatagttatgctacgagtga |
220 |
Q |
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| T |
49171667 |
tattagtcacgttgctcttatttacttattagcatgccttcctaaagataaggaatcca-cctcaactacttcctatagttatagttatgctacgagtga |
49171569 |
T |
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| Q |
221 |
tcgactcaattaaaataaacctag |
244 |
Q |
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| T |
49171568 |
tcgactcaattaaaataaacctag |
49171545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 251 - 373
Target Start/End: Complemental strand, 49171361 - 49171239
Alignment:
| Q |
251 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
350 |
Q |
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| T |
49171361 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
49171262 |
T |
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| Q |
351 |
gagaacatttcctactctctgct |
373 |
Q |
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| T |
49171261 |
gagaacatttcctactctctgct |
49171239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 61 - 373
Target Start/End: Complemental strand, 21492622 - 21492315
Alignment:
| Q |
61 |
tattctacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagcatgcctt |
160 |
Q |
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||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||| |
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| T |
21492622 |
tattctacttatttgaccatgagtgtccccttttgttgctgagtcaaaacactactctcttgttagtcacgttgctgttgtttacttattagtatgcctt |
21492523 |
T |
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| Q |
161 |
cctaaagataaggaatccacc--------ctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctagatttcatt |
252 |
Q |
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| T |
21492522 |
cctaaagataaggaatccacctcccatggttcaactacctcc------tatagttatgctatgagt----ggctcaattaaaataaacttagttttcttt |
21492433 |
T |
|
| Q |
253 |
tctttattattctga-ttttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagactg |
351 |
Q |
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| T |
21492432 |
tctttatttttctgatttttgttcaagaggggcggttttt----catatatctagctataataattttcctagggataacatacaattaggaagagacca |
21492337 |
T |
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| Q |
352 |
agaacatttcctactctctgct |
373 |
Q |
| |
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| ||| ||||||||| |||||| |
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| T |
21492336 |
ataacgtttcctactatctgct |
21492315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 45232599 - 45232677
Alignment:
| Q |
228 |
aattaaaataaacctagatttcatttctttattatt-ctgattttgttcaagaaggacggttatttgtatatgtatcta |
305 |
Q |
| |
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|||||||| |||| ||| |||| |||||||||| || |||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
45232599 |
aattaaaacaaacatagttttcttttctttatttttgctgattttgttcaagagggacggttatatatatacgtatcta |
45232677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 8730253 - 8730306
Alignment:
| Q |
66 |
tacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctc |
119 |
Q |
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| T |
8730253 |
tacttatttgactatcagtgttctcttttgttgctgagtcaaaacactactctc |
8730306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 9082140 - 9082193
Alignment:
| Q |
66 |
tacttatttgactatgagtgactccttttgttgctgagtcaaaacactactctc |
119 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
9082140 |
tacttatttgactatcagtgttctcttttgttgctgagtcaaaacactactctc |
9082193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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