View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_26 (Length: 361)
Name: NF11386_high_26
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 49213132 - 49213464
Alignment:
| Q |
18 |
gttttctatctcacttgtgactagaaagaaatggtacaatatcttcttgaagcagcatttgcagcatcaaaaatacttaattgtaatttttgggcaaaaa |
117 |
Q |
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| T |
49213132 |
gttttctatctcacttgtgactagaaagaaatggtacaatatcttcttgaagcagcatttgcagcatcaaaaatacttaattgtaatttttgggcaaaaa |
49213231 |
T |
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| Q |
118 |
tgctatttagtacaaagcatttccatcacgaaattcacaaatatcaatgtgatactttttgtggtggaaatgttagttctgtatttgtcggatacattgg |
217 |
Q |
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| T |
49213232 |
tgctatttagtacaaagcatttccatcacgaaattcacaaatatcaatgtgatactttttgtggtggaaattttagttctgtatttgtcggatacattgg |
49213331 |
T |
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| Q |
218 |
aggaatgagtgataggaaacaaccaatcacatgttgtgtacaatttcgtgaggcttgttttcgcgataagtagtattttccttttttggtattgtactga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49213332 |
aggaatgagtgataggaaacaaccaatcacatgttgtgtacaatttcgtgaggcttgttttcgcgataagtagtattttccttttttggtattgtactga |
49213431 |
T |
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| Q |
318 |
aactctttatattctatctttttatgtcctttg |
350 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
49213432 |
aactctttacattctatctttttatgtcctttg |
49213464 |
T |
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