View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_27 (Length: 352)
Name: NF11386_high_27
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 39772398 - 39772066
Alignment:
| Q |
18 |
ctttcttctcttttcactttggtttttgctttcataaataaactacttcttacttagttgatgaacgatttttgaagaagaaga---------tgtcaag |
108 |
Q |
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| T |
39772398 |
ctttcttctcttttcactttggtttttgctttcataaataaactacttcttacttagttgatgaacgatttttgaagaagaagaagaagaagatgtcaag |
39772299 |
T |
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| Q |
109 |
taagaagaaggtgttgtctgttgaagatgtgattaaatccgttggattaggttacgatctcaccaacgatctaagactcaaattctgtaaatatgattct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39772298 |
taagaagaaggtgttgtctgttgaagatgtgattaaatccgttggattaggttacgatctcaccaacgatctaagactcaaattctgcaaatatgattcc |
39772199 |
T |
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| Q |
209 |
aaattgattgctattgaccacgacaaccttcgtactgttgagcttcctggccgtgtttcgattcccaatgttcccaaatctatcaattgtgataaaggcg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39772198 |
aaattgattgctattgaccacgacaaccttcgtactgttgagcttcctggccgtgtttcgattcccaatgttcccaaatctatcaattgtgataaaggcg |
39772099 |
T |
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| Q |
309 |
accgtatgagattgtgttctgatgttctttctt |
341 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39772098 |
accgtatgagattgtgttctgatgttctttctt |
39772066 |
T |
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