View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_36 (Length: 315)
Name: NF11386_high_36
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 2322875 - 2323140
Alignment:
| Q |
19 |
cagagagagcattcttcaaatgaatgattaacttattgaaatcatactagaaaacagagacaaaatctctgatcttgtaatttggttcaatagaaattag |
118 |
Q |
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| T |
2322875 |
cagagagagcattcttcaaatgaatgattaacttattgaaatcatactagaaaacagagacaaaatctctgatcttgtaatttggttcaatagaaattag |
2322974 |
T |
|
| Q |
119 |
aatgaatgaaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctctaacagattcagttagagattacagactatctaattaatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2322975 |
aatgaatgaaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctctaacagattcagttagagattacagactatctaattaatca |
2323074 |
T |
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| Q |
219 |
aactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaaccctaaatataattcattt |
284 |
Q |
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| T |
2323075 |
aactccaagtgtgtaataattttagaacaacatttgtgtggtcacaatcctaaatataattcattt |
2323140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 80 - 288
Target Start/End: Original strand, 2311885 - 2312101
Alignment:
| Q |
80 |
aaaatctctgatcttgtaatt-tggttcaatagaaattagaatgaatgaaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctct |
178 |
Q |
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||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
2311885 |
aaaatatctcatcttgtaattgtggttcaatagaaattagattgaatgaaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctat |
2311984 |
T |
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| Q |
179 |
aacagattcagttagagattac--------agactatctaattaatcaaactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaacccta |
270 |
Q |
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| T |
2311985 |
aacatattcagttagagattacagttcaaaagcctatctaattaatc-aactccaagtgtgtaacagttttagaagaacacttctatggtcaaaacccca |
2312083 |
T |
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| Q |
271 |
aatataattcatttgcac |
288 |
Q |
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| T |
2312084 |
aatataattcattcgcac |
2312101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 80 - 288
Target Start/End: Original strand, 2296071 - 2296287
Alignment:
| Q |
80 |
aaaatctctgatcttgtaatt-tggttcaatagaaattagaatgaatgaaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctct |
178 |
Q |
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||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
2296071 |
aaaatatctcatcttgtaatcgtggttcaatagaaattagaatgaatgaaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctat |
2296170 |
T |
|
| Q |
179 |
aacagattcagttagagattac--------agactatctaattaatcaaactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaacccta |
270 |
Q |
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| T |
2296171 |
aacatattcagttagagattacagttcaaaagcttatctaattaatc-aactccaagtgtgtaacagttttagaagaacacttctatggtcaaaacccca |
2296269 |
T |
|
| Q |
271 |
aatataattcatttgcac |
288 |
Q |
| |
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||||||||||||| |||| |
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| T |
2296270 |
aatataattcattcgcac |
2296287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 2335185 - 2335254
Alignment:
| Q |
219 |
aactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaaccctaaatataattcatttgcac |
288 |
Q |
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|||||||||||||||||||||||||| |||||| | || ||| | ||||||||||||||||||||||||| |
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| T |
2335185 |
aactccaagtgtgtaacaattttagaggaacatatatgtggttataaccctaaatataattcatttgcac |
2335254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 32340151 - 32340100
Alignment:
| Q |
246 |
gaacatttgtgcggtcacaaccctaaatataattcattt--gcaccctcaca |
295 |
Q |
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| T |
32340151 |
gaacacttgtgcggtcacaaccctaaatataattcatttgagcaccctcaca |
32340100 |
T |
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