View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_41 (Length: 272)
Name: NF11386_high_41
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 3461412 - 3461675
Alignment:
| Q |
1 |
tgagcttccaacaaggacaaatcttttgccaatacattttacagattttgggaagctctccaatgaatatttttaatcgctagatgaaggaaaatgaatg |
100 |
Q |
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| T |
3461412 |
tgagcttccaacaaggacaaatcttttgccaatacattttacagattttgagaagctctccaatgaatatttttaatcgctagatgaaggaaaatgaatg |
3461511 |
T |
|
| Q |
101 |
gaaagggaattaaaatgatggctatagtcctgtgaattgagtagtgtctttcttctcccttcttttcttctaattccaaactcattgtactcaacttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3461512 |
gaaagggaattaaaatgatggctatagtcctgtgaattgagtagtgtctttcttctcccttcttttcttctaattccaaactcattgtactcaacttgag |
3461611 |
T |
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| Q |
201 |
gagattatccattcattataaagagtgaatgaatattcagaagcttgctgaaagtcttcttctc |
264 |
Q |
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| T |
3461612 |
gagattatccattcattataaagagtgaatgaatattcagaagcttgctgaaagtcttcttctc |
3461675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 11652716 - 11652765
Alignment:
| Q |
146 |
gtctttcttctcccttcttttcttctaattccaaactcattgtactcaac |
195 |
Q |
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| T |
11652716 |
gtctttcttctccctccttttcttctaattccaaactccttgtactcaac |
11652765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 1716720 - 1716911
Alignment:
| Q |
1 |
tgagcttccaacaaggacaaatcttttgccaa---tacattttacagattttgggaagctctccaatgaatatttttaatcgctagatgaaggaaaatga |
97 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
1716720 |
tgagcttccaacaaggacaaatctcatgccaacaatacattttacagattttgagaagctctccaatgaatatttttaatccctggatgaaggaaaatga |
1716819 |
T |
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| Q |
98 |
atggaaagggaattaaaatgatggctatagtcctgtgaattgag-tagtgtctttcttctcccttcttttcttctaattccaaactcattgt |
188 |
Q |
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|||||||| |||| |||||||||||| |||||| ||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1716820 |
atggaaagcgaataaaaatgatggctgcagtcctatgaattgagtttgagtctttcttctccctccttttcttctaattccaaactcattgt |
1716911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42221113 - 42221328
Alignment:
| Q |
1 |
tgagcttccaacaaggacaaatcttttgccaa---tacattttacagattttgggaagctctccaatgaatatttttaatcgctagatgaaggaaaatga |
97 |
Q |
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|||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
42221113 |
tgagcttccaacaaggacaaatctcatgccaacaatacgttttacagattttgagaagctctccaatgaatatttttaatccctggatgaaggaaaatga |
42221212 |
T |
|
| Q |
98 |
atggaaagggaattaaaatgatggctatagtcctgtgaattgag-tagtgtctttcttctcccttcttttcttctaattccaaactcattgtactcaact |
196 |
Q |
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||||||||| ||| ||||||||||||| ||| |||||||||| | | ||||||||||||||| |||||||||||||| ||| |||||||| |||||| |
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| T |
42221213 |
atggaaaggaaataaaaatgatggctacagttgcgtgaattgagtttgagtctttcttctccctctttttcttctaattcaaaattcattgtaatcaact |
42221312 |
T |
|
| Q |
197 |
tgaggagattatccat |
212 |
Q |
| |
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|||| ||||||||||| |
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| T |
42221313 |
tgagtagattatccat |
42221328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41841424 - 41841503
Alignment:
| Q |
1 |
tgagcttccaacaaggacaaatcttttgccaa---tacattttacagattttgggaagctctccaatgaatatttttaat |
77 |
Q |
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|||||||||||||||||||||||| || ||| || ||||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
41841424 |
tgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaatgattatttttaat |
41841503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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