View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_53 (Length: 241)
Name: NF11386_high_53
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_53 |
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| [»] scaffold0321 (2 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 15491 - 15669
Alignment:
| Q |
11 |
catgttatcaaggtgcatgataacaactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctgaaataataacgaga |
110 |
Q |
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| T |
15491 |
catgttatcaaggtgcatgataacaactatcttaaagatttcattttcctctggttttcctctatcattagctaatttgaaatctgaaataataacgaga |
15590 |
T |
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| Q |
111 |
atcgtcaaatgcatagtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
190 |
Q |
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| T |
15591 |
atcgtcaaatgcatagtggtcttctataataggatcgggg-attctgtgtcttcattttcgtggaaatatgtttcatgat |
15669 |
T |
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Target: scaffold0321; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 15705 - 15743
Alignment:
| Q |
187 |
tgatttgtataactttgtgagtgtttgagtgtttaatct |
225 |
Q |
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| T |
15705 |
tgatttgtataactttgtgagtgtttgagtgtttaatct |
15743 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 8666548 - 8666638
Alignment:
| Q |
98 |
aataataacgagaatcgtcaaatgcatagtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
190 |
Q |
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| T |
8666548 |
aataatgacgggaatcatcaaatgcatagtagtcttctataatagaat--gggaattctgtgtcttcatttttgtggaagtatattttatgat |
8666638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 8666439 - 8666501
Alignment:
| Q |
35 |
aactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctga |
97 |
Q |
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| T |
8666439 |
aactgtcttaagcatttcattctcctctttttttcctctatcattagctaatttgaaatctga |
8666501 |
T |
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