View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_56 (Length: 240)
Name: NF11386_high_56
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_56 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0117 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 45786004 - 45785782
Alignment:
| Q |
18 |
gattgatgtatataatgcaggttgctagctggggagcatatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcaca |
117 |
Q |
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| T |
45786004 |
gattgatgtatataatgcaggttgctagctggggagcatatcttcagtcacgtaacataattacattatcacttgcaccaagagatacacatgaagcaca |
45785905 |
T |
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| Q |
118 |
agttcagtttgctctagaacgtggtgttcctgcattgattggtgtcctagcttccaagaggttacctttcccttcaagagcttttgatatctcccactgc |
217 |
Q |
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| T |
45785904 |
agttcagtttgctctagaacgtggtgttcctgcattgattggtgtcctagcttccaagaggttacctttcccttcaagagcttttgatatctcccactgc |
45785805 |
T |
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| Q |
218 |
tctcgctgcctaattccatgggc |
240 |
Q |
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| T |
45785804 |
tctcgctgcctaattccatgggc |
45785782 |
T |
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Target: scaffold0019 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 66822 - 66650
Alignment:
| Q |
32 |
atgcaggttgctagctggggagcatatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttcagtttgctc |
131 |
Q |
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| T |
66822 |
atgcaggttgctagttggggagcctatctactatcacgtgacatattaacagtgtcaattgcaccaagggatactcatgaagcacaagttcaatttgctc |
66723 |
T |
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| Q |
132 |
tagaacgtggtgttcctgcattgattggtgtcctagcttccaagaggttacctttcccttcaagagcttttga |
204 |
Q |
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| T |
66722 |
ttgaaagaggtgttcctgcagttattggtgtttttgcttcaaagagattacctttcccttcaagagcctttga |
66650 |
T |
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Target: scaffold0117 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 14336 - 14239
Alignment:
| Q |
25 |
gtatataatgcaggttgctagctggggagcatatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttc |
122 |
Q |
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| T |
14336 |
gtatataatgcaggttgctagctggggagcatatattcaatcacgtaacataataacattatcaattgcaacaagggacacacatgaagcacatgttc |
14239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 14243 - 14181
Alignment:
| Q |
142 |
tgttcctgcattgattggtgtcctagcttccaagaggttacctttcccttcaagagcttttga |
204 |
Q |
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| T |
14243 |
tgttcctgcattgattggtgtcttagcctccaagaggttaccattccattcaagagcttttga |
14181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 12403002 - 12402890
Alignment:
| Q |
47 |
tggggagcatatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttc |
146 |
Q |
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| T |
12403002 |
tggggagcttatcttctgtcacgtaacatattaacggtgtcagttgcaccaagagatactcatgaagctcaagttcaatttgctcttgaacgaggtgttc |
12402903 |
T |
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| Q |
147 |
ctgcattgattgg |
159 |
Q |
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| T |
12402902 |
ctgcattgattgg |
12402890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 28639973 - 28639846
Alignment:
| Q |
35 |
caggttgctagctggggagcatatcttcagtcacgtaacataattacattatcacttgcaccaagggatacacatgaagcacaagttcagtttgctctag |
134 |
Q |
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| T |
28639973 |
caggttgcaagttggggagcatatcttttaccacgtgacatattagcagtgtcatttgcaccaagagatacacatgaagctcaagttcaatttgctcttg |
28639874 |
T |
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| Q |
135 |
aacgtggtgttcctgcattgattggtgt |
162 |
Q |
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| T |
28639873 |
aacgaggagttccagctttgattggtgt |
28639846 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 17755060 - 17754983
Alignment:
| Q |
90 |
ttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgcattgattggtgtcctag |
167 |
Q |
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| T |
17755060 |
ttgcacctagggactcacatgaagcacaagtacagtttgcacttgaaaggggtgtacctgctgtcattggtgtcctag |
17754983 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 14186410 - 14186482
Alignment:
| Q |
90 |
ttgcaccaagggatacacatgaagcacaagttcagtttgctctagaacgtggtgttcctgcattgattggtgt |
162 |
Q |
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| T |
14186410 |
ttgcaccaagggactctcatgaagcacaagttcaatttgctttggagagaggtgttcctgcaatcattggtgt |
14186482 |
T |
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