View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_high_6 (Length: 630)

Name: NF11386_high_6
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_high_6
NF11386_high_6
[»] chr7 (5 HSPs)
chr7 (285-613)||(48593579-48593913)
chr7 (208-280)||(49172351-49172423)
chr7 (21-80)||(49171708-49171767)
chr7 (117-186)||(49172282-49172351)
chr7 (119-187)||(40187634-40187703)
[»] chr1 (4 HSPs)
chr1 (25-80)||(8420540-8420595)
chr1 (124-189)||(48131231-48131297)
chr1 (118-188)||(42045369-42045440)
chr1 (135-187)||(44243867-44243920)
[»] chr5 (5 HSPs)
chr5 (124-189)||(32565516-32565582)
chr5 (118-188)||(6489000-6489071)
chr5 (120-188)||(20370130-20370198)
chr5 (117-180)||(11017177-11017241)
chr5 (133-188)||(27721687-27721743)
[»] chr2 (2 HSPs)
chr2 (118-185)||(34191305-34191373)
chr2 (135-188)||(346138-346192)
[»] chr8 (6 HSPs)
chr8 (134-180)||(41625195-41625242)
chr8 (119-187)||(11708980-11709049)
chr8 (124-188)||(27191751-27191816)
chr8 (124-188)||(39821877-39821942)
chr8 (143-190)||(33445561-33445609)
chr8 (135-190)||(33451363-33451419)
[»] scaffold0012 (1 HSPs)
scaffold0012 (124-189)||(118811-118877)
[»] chr6 (2 HSPs)
chr6 (151-189)||(11129641-11129679)
chr6 (133-180)||(30639438-30639486)
[»] chr4 (3 HSPs)
chr4 (118-187)||(13121538-13121608)
chr4 (119-188)||(22164267-22164337)
chr4 (133-180)||(50442759-50442807)
[»] chr3 (3 HSPs)
chr3 (133-187)||(20949933-20949986)
chr3 (117-186)||(37920994-37921064)
chr3 (119-187)||(48315022-48315091)
[»] scaffold0445 (1 HSPs)
scaffold0445 (117-180)||(4471-4535)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 285 - 613
Target Start/End: Original strand, 48593579 - 48593913
Alignment:
Q  285 aaagtcatagaaacaaagagaacagagatttatggaatattcgttgtgacttctttccacaattccaagacaaagggtgcctactcactagattccatca 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48593579 aaagtcatagaaacaaagagaacagagatttatggaatattcgttgtgacttctttccacaattccaagacaaagggtgcctactcactagattccatca 48593678  T
Q  385 taaacaaaacaagataaactaaaggcataaacagtaaatataaggaaattccttactttattaatgtaataacaaggtataagaacaagaaattatagct 484  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48593679 taaacaaaacaagataaactaaaggcataaaccgtaaatataaggaaattccttactttattaatgtaataacaaggtataagaacaagaaattataggt 48593778  T
Q  485 ttcttgaaagaat------accaagtataagggtctctataaatgtcaacggaggtacggagttatattatgtgatattagatattgagataactaaact 578  Q
    |||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48593779 ttcttgaaagaatatgcaaaccaagtataagggtctctataaatgtcaacggaggtacggagttatattatgtgatactagatattgagataactaaact 48593878  T
Q  579 aatcctacaattttatgactaaatattgaatatat 613  Q
    |||||||||||||||||||||||||||||||||||    
T  48593879 aatcctacaattttatgactaaatattgaatatat 48593913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 49172351 - 49172423
Alignment:
Q  208 atataagaagtggttcatgtgcatcgtcttagaatgtatattcacgtgcattgtcaagataaaattagaattc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49172351 atataagaagtggttcatgtgcatcgtcttagaatgtatattcacgtgcattgtcaagataaaattagaattc 49172423  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 49171767 - 49171708
Alignment:
Q  21 cacgttgtggtggttactccattcctatttccactcaatttattctacttatttgactat 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49171767 cacgttgtggtggttactccattcctatttccactcaatttattctacttatttgactat 49171708  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 49172282 - 49172351
Alignment:
Q  117 tccgggatttgaactgcagaccttacatatattagcattattcctgccaactgagctaagctcatgagga 186  Q
    |||||||||| |||||||||||||||||||||||||||| | |||  ||||||||||||||||| |||||    
T  49172282 tccgggatttaaactgcagaccttacatatattagcattgtccctatcaactgagctaagctcacgagga 49172351  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 40187634 - 40187703
Alignment:
Q  119 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 187  Q
    |||| ||||||| ||||||||||||||||||| ||||| | ||| ||||||||| |||||||||||||||    
T  40187634 cggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaagctcatgaggac 40187703  T

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Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 8420540 - 8420595
Alignment:
Q  25 ttgtggtggttactccattcctatttccactcaatttattctacttatttgactat 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8420540 ttgtggtggttactccattcctatttccactcaatttattctacttatttgactat 8420595  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 48131231 - 48131297
Alignment:
Q  124 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 189  Q
    |||||||| |||||||||||||||||| |||||||  |||||||||||| ||| |||| ||||||||    
T  48131231 tttgaactccagaccttacatatattatgcattatctctgccaactgagttaaactcacgaggacaa 48131297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 42045369 - 42045440
Alignment:
Q  118 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    ||||| |||||||| |||||||| ||||||||| ||||| | | | |||||||||||||||||| |||||||    
T  42045369 ccggggtttgaactccagaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 42045440  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 44243920 - 44243867
Alignment:
Q  135 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 187  Q
    |||||||||||||||| ||||| ||||| ||||||||||||| |||| ||||||    
T  44243920 gaccttacatatattatgcattgttcctaccaactgagctaaactcacgaggac 44243867  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 32565582 - 32565516
Alignment:
Q  124 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 189  Q
    |||||||| | |||||||||||||||| ||||||| ||| ||| |||||||||||||| ||||||||    
T  32565582 tttgaacttcggaccttacatatattatgcattatccctaccagctgagctaagctcacgaggacaa 32565516  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 6489071 - 6489000
Alignment:
Q  118 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    ||||| |||||||  |||||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||||    
T  6489071 ccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 20370130 - 20370198
Alignment:
Q  120 gggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    |||||||||||| || |||||  |||||||| ||||||| ||| |||||||||||||||||| |||||||    
T  20370130 gggatttgaact-caaaccttgtatatattatgcattatccctaccaactgagctaagctcacgaggaca 20370198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 11017241 - 11017177
Alignment:
Q  117 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctca 180  Q
    ||||||||| ||||  |||||||| ||||||||| ||||||| ||| ||||||||||||| ||||    
T  11017241 tccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaactca 11017177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 27721687 - 27721743
Alignment:
Q  133 cagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    ||||| || ||||||||| ||||| ||||| |||||||||||||||||| |||||||    
T  27721687 cagactttgcatatattatgcattgttcctaccaactgagctaagctcacgaggaca 27721743  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 34191305 - 34191373
Alignment:
Q  118 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgagg 185  Q
    |||||||||||||   |||| |||||||||||| ||||| | ||| |||||||||||||||||||||||    
T  34191305 ccgggatttgaaccttagactttacatatattatgcattgtccctaccaactgagctaagctcatgagg 34191373  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 346138 - 346192
Alignment:
Q  135 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    |||||||||||||||| |||||||||   |||||||||||||||||| |||||||    
T  346138 gaccttacatatattatgcattattcaaaccaactgagctaagctcacgaggaca 346192  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 41625242 - 41625195
Alignment:
Q  134 agaccttacatatatta-gcattattcctgccaactgagctaagctca 180  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  41625242 agaccttacatatattatgcattattcataccaactgagctaagctca 41625195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 11709049 - 11708980
Alignment:
Q  119 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 187  Q
    |||| |||||||| | |||||| ||||||||| ||||| | ||| |||||||||||||||||| ||||||    
T  11709049 cggggtttgaacttcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 11708980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 27191816 - 27191751
Alignment:
Q  124 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    |||||||| |||||||| ||||||||| | ||| ||| | |||||||||||||||||| |||||||    
T  27191816 tttgaacttcagaccttgcatatattatgaattgttcttaccaactgagctaagctcacgaggaca 27191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 39821942 - 39821877
Alignment:
Q  124 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    |||||||  |||||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||||    
T  39821942 tttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 39821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 33445609 - 33445561
Alignment:
Q  143 atatatta-gcattattcctgccaactgagctaagctcatgaggacaac 190  Q
    |||||||| ||||| ||||| |||||||||||||||||| |||||||||    
T  33445609 atatattatgcattgttcctaccaactgagctaagctcacgaggacaac 33445561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 33451363 - 33451419
Alignment:
Q  135 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaac 190  Q
    |||||| ||||||||| ||||||| | | |||||||||||||||||| |||||||||    
T  33451363 gaccttgcatatattatgcattatccataccaactgagctaagctcacgaggacaac 33451419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 118877 - 118811
Alignment:
Q  124 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 189  Q
    |||||||| |||||||||||||| ||| ||||| |||   |||||||||||||||||| ||||||||    
T  118877 tttgaactccagaccttacatattttatgcattgttcaaaccaactgagctaagctcacgaggacaa 118811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 11129641 - 11129679
Alignment:
Q  151 gcattattcctgccaactgagctaagctcatgaggacaa 189  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  11129641 gcattgttcctaccaactgagctaagctcatgaggacaa 11129679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 30639438 - 30639486
Alignment:
Q  133 cagaccttacatatatta-gcattattcctgccaactgagctaagctca 180  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||| ||||    
T  30639438 cagaccttgcatatattatgcattattcctaccaactgagctaaactca 30639486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 13121608 - 13121538
Alignment:
Q  118 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 187  Q
    ||||| |||||||| |||||||| ||||||||| ||||| | ||| |||||| ||||||||||| ||||||    
T  13121608 ccggggtttgaacttcagaccttgcatatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 22164267 - 22164337
Alignment:
Q  119 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 188  Q
    |||| |||||||  |||||||||||||||||| ||||| ||||| |||||| |||||| |||| |||||||    
T  22164267 cggggtttgaaccccagaccttacatatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 50442759 - 50442807
Alignment:
Q  133 cagaccttacatatatta-gcattattcctgccaactgagctaagctca 180  Q
    |||||||| ||||||||| ||||||| ||| ||||||||||||||||||    
T  50442759 cagaccttgcatatattatgcattatccctaccaactgagctaagctca 50442807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 20949986 - 20949933
Alignment:
Q  133 cagaccttacatatattagcattattcctgccaactgagctaagctcatgaggac 187  Q
    ||||||||||||||||| ||||| ||| | ||| |||||||||||||||||||||    
T  20949986 cagaccttacatatatt-gcattgttcataccatctgagctaagctcatgaggac 20949933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 37920994 - 37921064
Alignment:
Q  117 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgagga 186  Q
    |||||||||||||| |||||| || ||||||||| ||||||| |||  |||||||||||| |||| |||||    
T  37920994 tccgggatttgaaccgcagacattgcatatattatgcattatccctatcaactgagctaaactcacgagga 37921064  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 48315022 - 48315091
Alignment:
Q  119 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 187  Q
    ||||||||||||  | |||||| ||||||||| ||||||| | | |||||||||||||||||| ||||||    
T  48315022 cgggatttgaaccccggaccttgcatatattatgcattatccttaccaactgagctaagctcacgaggac 48315091  T

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Target: scaffold0445 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 4535 - 4471
Alignment:
Q  117 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctca 180  Q
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T  4535 tccgggattcgaactctagaccttacatatattatgcattattcctatcaacttagttaagctca 4471  T

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