View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_high_9 (Length: 482)
Name: NF11386_high_9
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 227 - 473
Target Start/End: Complemental strand, 50453607 - 50453355
Alignment:
| Q |
227 |
ttaacaagcctgtttcttcagtccaagttggtaagaatattaatgaacataactggtctagatcaaggatatat-------atagatcgaccattaatta |
319 |
Q |
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| T |
50453607 |
ttaacaagcctgtttcttcagtccaagttggtaagaatattaatgaacataactggtctagatcaaggatatatcatatatatagatcgaccattaatta |
50453508 |
T |
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| Q |
320 |
attccnnnnnnnnnatgtatcaccaaaaaaggttaacttctttttatttagagtttatataagtaaaaactgtacctagcattaaaaattatgagtgaga |
419 |
Q |
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| T |
50453507 |
atttctttttttt-atgtatcaccaaaaaaggttaacttctttttatttagagtttatataagtaaaaactgtacctagcattaaaaattatgagtgaga |
50453409 |
T |
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| Q |
420 |
atgcatttatgaatcgatcgatcaagaagtacgtctttatatatttcatctcac |
473 |
Q |
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| T |
50453408 |
atgcatttatgaatcgatcgatcaataagtacgtctttatatatttcatgtcac |
50453355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 50453818 - 50453720
Alignment:
| Q |
15 |
agtaacattggagaagcttgactccaatcattaacaatttaaatgaaaattatgaacagtttgagttacaaattgcaataatgaacatcaatcaggaag |
113 |
Q |
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| T |
50453818 |
agtaacattggagaagcttgactccaatcattaacaatttaaatgaaaattatgaacagtttgagttacaaattacaataatgaacatcaatcaggaag |
50453720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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