View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386_low_10 (Length: 515)
Name: NF11386_low_10
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 13156786 - 13157268
Alignment:
| Q |
18 |
caaaacatgtcttaaacttttccactcactcaaaaaacacgaacacaacctgttcgaaaaaattccccaaccaaatgcttcctcgattaaccgctccatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13156786 |
caaaacatgtcttaaacttttccactcactcaaaaaacacgaacacaacctgttcgaaaaaattccccaaccaaatgcttcctcgattaaccgctccatg |
13156885 |
T |
|
| Q |
118 |
cttaatttcttacataaaaatcttccctttcaagctctttccgtattcaagaaccaaacccagtttccgtttcttcaaaatatcgatgaggtgacacttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13156886 |
cttaatttcttacataaaaatcttccctttcaagctctttccgtattcaagaaccaaacccagtttccgtttcttcaaaatatcgatgaggtgacacttg |
13156985 |
T |
|
| Q |
218 |
ccttgtcgttcaaggcatgtcggggtgaggtcatattgggtgcccagattcatggatttgttgtggctacttggtttgtttcacgtgttactgtgtcgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13156986 |
ccttgtcgttcaaggcatgtcggggtgagttcatattgggtgcccagattcatggatttgttgtggctactgggtttgtttcacgtgttactgtgtcgaa |
13157085 |
T |
|
| Q |
318 |
ttcgttgatgaaaatgtactgtaaagctgggagatttgaacttgctttgtgtgttttcgagggtttgagttgtcctgatattgtttcgtggaatactatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13157086 |
ttcgttgatgaaaatgtactgtaaagctgggagatttgaacttgctttgtgtgttttcgagggtttgagttgtcctgatattgtttcgtggaatactatt |
13157185 |
T |
|
| Q |
418 |
ctttctgggtttgagaagagtgttgatgctttgaatttcgcttgttttatgcatttgaatggggtggtttttgatcctgtgac |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13157186 |
ctttctgggtttgagaagagtgttgatgctttgaatttcgcgtgttttatgcatttgaatggggtggtttttgatcctgtgac |
13157268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University