View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_16 (Length: 434)
Name: NF11386_low_16
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 34826380 - 34825979
Alignment:
| Q |
14 |
agagtatacgagtgacacggaatatgacaaggaatatgaagaatataggagttgaatttggagaaagttcatgcttgatagtagatggtttggagaatgt |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826380 |
agagtatacgggtgacacggaatatgacaaggaatatgaagaatataggagttgaaattggagaaagttcatgcttgatagtagatggtttggagaatgt |
34826281 |
T |
|
| Q |
114 |
tgtgaaagagaaaatgaagggtagtggtcgtaaagaaaagaagaaattagaggaagagannnnnnngaacaagttagaggaagagattgttggtgatggt |
213 |
Q |
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|||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
34826280 |
tgtgaaagagaaaatgaagggtggtggtcgcaaaggaaagaagaaattagaggaagatatttttttgaacaagttagaggaagagattgttggtgatggt |
34826181 |
T |
|
| Q |
214 |
aaagagaactgtgatgaagctgaagaaaaggagaaatataattgggatgggaatatgcttgatttggagaagatgagtttaggtgagtggtttgatttct |
313 |
Q |
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| T |
34826180 |
aaagagaactgtgatgaagctgaagaaaaggagaaatataattgggatgggaatatgcctgatttggagaagatgagtttaggtgagtggtttgatttct |
34826081 |
T |
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| Q |
314 |
tggaggtttatttgccaaaacaaatacatgatgaaacggaagagattattgattcaatgagacaaaaagctgagagactccgtgaatatgtcatgatgca |
413 |
Q |
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| T |
34826080 |
tggaggtttatttgccaaaacaaatacatgatgaaacggaagatattattgattcaatgagacaaaaagctgagagactccgtgaatatgttatgatgca |
34825981 |
T |
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| Q |
414 |
tg |
415 |
Q |
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|| |
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| T |
34825980 |
tg |
34825979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 236 - 395
Target Start/End: Complemental strand, 34823089 - 34822930
Alignment:
| Q |
236 |
aagaaaaggagaaatataattgggatgggaatatgcttgatttggagaagatgagtttaggtgagtggtttgatttcttggaggtttatttgccaaaaca |
335 |
Q |
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| T |
34823089 |
aagaaaaggagaatttgaatggggatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaaca |
34822990 |
T |
|
| Q |
336 |
aatacatgatgaaacggaagagattattgattcaatgagacaaaaagctgagagactccg |
395 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
34822989 |
gatacatgatgaaacggaagagattattgattccatgaaacaaaaagccgagagactccg |
34822930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 34823363 - 34823321
Alignment:
| Q |
208 |
gatggtaaagagaactgtgatgaagctgaagaaaaggagaaat |
250 |
Q |
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| T |
34823363 |
gatggtaaagagaattgtgatgatgctgaagaaaaggagaaat |
34823321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 236 - 395
Target Start/End: Complemental strand, 28945726 - 28945567
Alignment:
| Q |
236 |
aagaaaaggagaaatataattgggatgggaatatgcttgatttggagaagatgagtttaggtgagtggtttgatttcttggaggtttatttgccaaaaca |
335 |
Q |
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||||||||||||| | ||| |||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28945726 |
aagaaaaggagaatttgaatggggatgagaattggcctgatttggagaagatgaatttaggtgagtggtttgatttcttggaagtttatttgccaaaaca |
28945627 |
T |
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| Q |
336 |
aatacatgatgaaacggaagagattattgattcaatgagacaaaaagctgagagactccg |
395 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
28945626 |
gatacatgatgaaacggaagagattattgattccatgacacaaaaagccgagagactccg |
28945567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 28946000 - 28945958
Alignment:
| Q |
208 |
gatggtaaagagaactgtgatgaagctgaagaaaaggagaaat |
250 |
Q |
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| T |
28946000 |
gatggtaaagagaattgtgatgatgctgaagaaaaggagaaat |
28945958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 208 - 395
Target Start/End: Original strand, 42232912 - 42233096
Alignment:
| Q |
208 |
gatggtaaagagaactgtgatgaagctgaa-gaaaaggagaaatataattgggatgggaatatgcttgatttggagaagatgagtttaggtgagtggttt |
306 |
Q |
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|||||||||||||| ||||||| |||| ||||||||||| | | | |||||| |||| || ||||||||||||||| |||||||||||||||||| |
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| T |
42232912 |
gatggtaaagagaattgtgatg----tgaatgaaaaggagaatttgattggggatgagaattggcctgatttggagaagattagtttaggtgagtggttt |
42233007 |
T |
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| Q |
307 |
gatttcttggaggtttatttgccaaaacaaatacatgatgaaacggaagagattattgattcaatgagacaaaaagctgagagactccg |
395 |
Q |
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||||||||||| |||| |||||| ||||| ||||||||||||||| ||||||| |||||||| |||||||||||||| ||| ||||||| |
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| T |
42233008 |
gatttcttggaagtttgtttgccgaaacagatacatgatgaaacgaaagagatcattgattccatgagacaaaaagccgagggactccg |
42233096 |
T |
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