View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386_low_17 (Length: 427)
Name: NF11386_low_17
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_17 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Original strand, 31172159 - 31172573
Alignment:
| Q |
12 |
tgaatatattcgagaaattgaacatccaatggacatagttttgcacaaaataaatttaacatccaatatactactatttagtttttagaattaacttatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31172159 |
tgaatatattcgagaaattgaacatccaatgtacatagttttgcacaaaataaatttaacatccaatatactactatttagtttttagaattaacttatg |
31172258 |
T |
|
| Q |
112 |
gtgactaaattaacatcattagtttgtgacaatattaaatttttgcaaatgaatgacaatcatcattatatatgagtaatgactatgtcttatagtctac |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31172259 |
gtgactaaattaacatgattagtttgtgacaatattaaatttttgcaaatgaatgacaatcatcattatatatgagtaatgactatgtcttatagtctac |
31172358 |
T |
|
| Q |
212 |
acccaatatttggtaacacaagtttcttagtagaacttgttcaacttcaatgaccttttaagcaattgttcaatattcaaatctcaacagattttgatga |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
31172359 |
acacaatatttggtaacacaagtttcttagtagaacttgttcaacttcaatgaccttttaagcaattgttctatattcaaatctcatcagattttcatga |
31172458 |
T |
|
| Q |
312 |
ttcttgatgcaattaaatcctcagttaacctactatcacatggagtaggttaatctcatccccaatcaaagcattcccctgaattagnnnnnnncattga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31172459 |
ttcttgatgcaattaaatcctcagttaacctattatcacatggagtaggttaatctcatccccaatcaaagcattcccctgaatta-aaaaaaacattga |
31172557 |
T |
|
| Q |
412 |
taacatcaacaaaaac |
427 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31172558 |
taacatcaacaaaaac |
31172573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 235 - 427
Target Start/End: Complemental strand, 31228086 - 31227894
Alignment:
| Q |
235 |
ttcttagtagaacttgttcaacttcaatgaccttttaagcaattgttcaatattcaaatctcaacagattttgatgattcttgatgcaattaaatcctca |
334 |
Q |
| |
|
||||||| || | ||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31228086 |
ttcttagaaggatttgttcatcttcattggccttttaggcaattgttcaatattcaaatctcaacagattttgatgattcttgatgcaattaaatcctca |
31227987 |
T |
|
| Q |
335 |
gttaacctactatcacatggagtaggttaatctcatccccaatcaaagcattcccctgaattagnnnnnnncattgataacatcaacaaaaac |
427 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
31227986 |
gttaacctattatcacatggagtgggttaatctcatccccaatcaaagcattcccctgaattagataaaaactttgataacatcaacaaaaac |
31227894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 397
Target Start/End: Complemental strand, 31233176 - 31233053
Alignment:
| Q |
274 |
caattgttcaatattcaaatctcaacagattttgatgattcttgatgcaattaaatcctcagttaacctactatcacatggagtaggttaatctcatccc |
373 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||||||||||||||| ||||||| ||||| ||| ||||||||||||| | || ||||||| || |
|
|
| T |
31233176 |
caatttttcaatattcaaatctcatcggatttacatgattcttgatgcaattgaatcctctgttaatctattatcacatggagtggattgatctcatacc |
31233077 |
T |
|
| Q |
374 |
caatcaaagcattcccctgaatta |
397 |
Q |
| |
|
|||||| | ||||||||| ||||| |
|
|
| T |
31233076 |
caatcataccattccccttaatta |
31233053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 38618509 - 38618614
Alignment:
| Q |
248 |
ttgttcaacttcaatgaccttttaagcaattgttcaatattcaaatctcaacagattttgatgattcttgatgcaattaaatcctcagttaacctactat |
347 |
Q |
| |
|
||||||||| | | ||||||| ||| |||| ||| | || |||||||| | |||| ||| | |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
38618509 |
ttgttcaaccttagtgaccttataatcaatagttaagtactcaaatctaatcagaatttcacaattcttgatgcaatggaatcctcagttactctactat |
38618608 |
T |
|
| Q |
348 |
cacatg |
353 |
Q |
| |
|
|||||| |
|
|
| T |
38618609 |
cacatg |
38618614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University