View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_18 (Length: 422)
Name: NF11386_low_18
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Original strand, 5252300 - 5252712
Alignment:
| Q |
7 |
gacaatacattcttcaccttcactatcatatatagtgtcatattcaattcaagacaagatatataaatacgtgacttagcttgttggggaggaaggtttt |
106 |
Q |
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| T |
5252300 |
gacaatacattcttcaccttcactatcatatatagtgtcatattcaattcaagacaagatatataaatacgtgacttagcttgttggggaggaaggtttt |
5252399 |
T |
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| Q |
107 |
ttcccctctctttaatataaaatattaaacacattggtataactattttaggcatagnnnnnnnnn-ccatcataaaacagtgatccaaaatctgttaag |
205 |
Q |
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| T |
5252400 |
ttcccctctctttaatataaaatattaaacacattggtataactattttaggcataattttttttttccatcataaaacagtgatccaaaatctgtcaag |
5252499 |
T |
|
| Q |
206 |
acatccaaaattcagcaaaattttaggcatattattgtatataacatagatcaagtcattcacttggtgctactacatataaatgatgcttatttagatt |
305 |
Q |
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| T |
5252500 |
acatccaaaattcagcaaaattttaggcatattattgtatacaacacagatcaagtcattcacttggtgctactacatataaatgatgcttatatagatg |
5252599 |
T |
|
| Q |
306 |
attaaatgttggatatagatcaacttgtttgagctaacaattaaaggatccaaatttaaaccctgatgatcaatg-nnnnnnnctaaaatacaactaata |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
5252600 |
attaaatgttggatatagatcaacttgtttgagctaacaattaaaggatccaagtttaaaccctgatgatcaatgaaaaaaaactaaaatacaactaata |
5252699 |
T |
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| Q |
405 |
gagtaacatttgt |
417 |
Q |
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| T |
5252700 |
gagtaacatttgt |
5252712 |
T |
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