View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_19 (Length: 419)
Name: NF11386_low_19
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 8757748 - 8758146
Alignment:
| Q |
19 |
tcaatcgcgcttaggaaattcgctggtagtgaaaactaccttcatgttgatcactccaaggcaattatcagtgcaggtggggcaaaacacttgattcagc |
118 |
Q |
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| T |
8757748 |
tcaatcgcgcttaggaaattcgccggcagtgaaaactaccttcatgttgatcactccaacgcaattatcagtgcaggtggggcaaaacacttgattcagc |
8757847 |
T |
|
| Q |
119 |
ttgtatattttggagaacaaatggttcagattccagcattggttctgctctcttacattgcattgcacgtgccggatagcgaggaacttgctctggctga |
218 |
Q |
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| T |
8757848 |
ttgtatattttggagaacaaatggttcagattccagcattggttctgctctcttacattgcattgcatgtgccggatagcgaggaacttgctctggctga |
8757947 |
T |
|
| Q |
219 |
ggtgctaggagtgcttgaatgggcatccaagcaatctttcatgcaacatgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctt |
318 |
Q |
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| T |
8757948 |
ggtgctaggagtgcttgaatgggcatccaagcaatctttcatgcaacatgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctt |
8758047 |
T |
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| Q |
319 |
tatcagtctagaggttcaagaggattccatcataaattgcatcagtaggaagagtagtacattgccatcatcattgtaaatgttaaggtttttcagcca |
417 |
Q |
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| T |
8758048 |
tatcagtctagaggttcaagaggattccatcataaattgcatcagtaggaagaatagtacattgccatcatcattgtaaatgttaaggtttttcagcca |
8758146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 152 - 374
Target Start/End: Complemental strand, 32030581 - 32030362
Alignment:
| Q |
152 |
cagcattggttctgctctcttacattgcattgcacgtgccggatagcgaggaacttgctctggctgaggtgctaggagtgcttgaatgggcatccaagca |
251 |
Q |
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| T |
32030581 |
cagccttggttctgctatcctatattgcgttgcacgtgccagacagcgaagaactagcaaaagctgagattctgggagttcttgaatgggcgtctaagca |
32030482 |
T |
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| Q |
252 |
atctttcatgcaacatgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccatcat |
351 |
Q |
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| T |
32030481 |
acctaacatggctcatgatgaagctattgaggcattgttgcaagagtccaagagtaggctggagctttaccagtctagaggttcaagaggattc---caa |
32030385 |
T |
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| Q |
352 |
aaattgcatcagtaggaagagta |
374 |
Q |
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||||| ||||| ||||||||||| |
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| T |
32030384 |
aaattacatcaataggaagagta |
32030362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 28035212 - 28035158
Alignment:
| Q |
294 |
agaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccat |
348 |
Q |
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| T |
28035212 |
agaagccaaaagtaggttggaactttatcaatcaagaggtaccagaggattccat |
28035158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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