View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_low_20 (Length: 417)

Name: NF11386_low_20
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_low_20
NF11386_low_20
[»] chr1 (9 HSPs)
chr1 (77-401)||(8016214-8016541)
chr1 (139-196)||(46252676-46252733)
chr1 (137-174)||(1565551-1565588)
chr1 (159-196)||(3223706-3223743)
chr1 (141-194)||(5886990-5887043)
chr1 (57-86)||(8016160-8016189)
chr1 (139-196)||(10809364-10809421)
chr1 (128-185)||(38503470-38503527)
chr1 (157-193)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (139-196)||(3528822-3528879)
chr6 (147-196)||(281842-281891)
chr6 (159-200)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (140-196)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (139-193)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (139-185)||(35379021-35379067)
chr2 (139-193)||(44443340-44443394)
chr2 (139-196)||(43199778-43199835)
chr2 (139-199)||(43910990-43911050)
[»] chr8 (2 HSPs)
chr8 (363-400)||(4577008-4577045)
chr8 (139-196)||(7714261-7714318)
[»] chr3 (2 HSPs)
chr3 (229-262)||(1288764-1288797)
chr3 (139-191)||(41633379-41633431)
[»] chr4 (1 HSPs)
chr4 (226-258)||(38336816-38336848)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 77 - 401
Target Start/End: Original strand, 8016214 - 8016541
Alignment:
Q  77 aagccatttttctataacaaaaaataaaatggagttattgttttcatatgagtttctgttatctatcttggagagctcaggaaaataagctgaaaacaag 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8016214 aagccatttttctataacaaaaaataaaatggagttattgttttcatatgagtttctgttatctatcttggagagcttaggaaaataagctgaaaacaag 8016313  T
Q  177 ttataaacatttcataagttctcctggccagtctcataaatattcgagacaattgat---aagctcaaataagtcaatcaaaacaaactaacctcggatg 273  Q
    |||| ||||| ||||||||||||| || ||||||||||||||||| |||||||||||   || ||||||||||||||||||||||||||||||||||| |    
T  8016314 ttatgaacatgtcataagttctcccggacagtctcataaatattcaagacaattgatgataatctcaaataagtcaatcaaaacaaactaacctcggacg 8016413  T
Q  274 tagcaaacattagatcatgaggtatagcaacttgatcaaagtcaacatcaatgacacgatcatctttgccacctaattgtaccctcaacacacgaaagtt 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016414 tagcaaacattagatcatgaggtatagcaacttgatcaaagtcaacatcaatgacacgatcatctttgccacctaattgtaccctcaacacacgaaagtt 8016513  T
Q  374 tgttcctccaagatccaatgcataaaac 401  Q
    ||||||||||||||||||||||||||||    
T  8016514 tgttcctccaagatccaatgcataaaac 8016541  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 46252733 - 46252676
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 196  Q
    ||||||||||||||| | |||||||| |||||||||| |||| ||||| |||||||||    
T  46252733 ctatcttggagagcttatgaaaataacctgaaaacaacttatgaacatgtcataagtt 46252676  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 1565588 - 1565551
Alignment:
Q  137 atctatcttggagagctcaggaaaataagctgaaaaca 174  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  1565588 atctattttggagagctcatgaaaataagctgaaaaca 1565551  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 3223706 - 3223743
Alignment:
Q  159 aaataagctgaaaacaagttataaacatttcataagtt 196  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  3223706 aaataagctgaaaacaacttataaacatgtcataagtt 3223743  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 5887043 - 5886990
Alignment:
Q  141 atcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataag 194  Q
    |||||||||| || | ||||||||||||||||||| |||| ||||| |||||||    
T  5887043 atcttggagaacttacgaaaataagctgaaaacaacttatgaacatgtcataag 5886990  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 8016160 - 8016189
Alignment:
Q  57 catcaaagctttaacatgcaaagccatttt 86  Q
    ||||||||||||||||||||||||||||||    
T  8016160 catcaaagctttaacatgcaaagccatttt 8016189  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 10809364 - 10809421
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 196  Q
    |||| ||||||| || | ||||||||||||||||||  |||||||||| |||||||||    
T  10809364 ctatattggagaacttatgaaaataagctgaaaacatattataaacatgtcataagtt 10809421  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 38503527 - 38503470
Alignment:
Q  128 gtttctgttatctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 185  Q
    |||| ||||| |||||||||||| || | ||||||||||||||||||| |||| ||||    
T  38503527 gtttttgttagctatcttggagaacttatgaaaataagctgaaaacaacttatgaaca 38503470  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 29635384 - 29635420
Alignment:
Q  157 gaaaataagctgaaaacaagttataaacatttcataa 193  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  29635384 gaaaataagctgaaaacaacttataaacatgtcataa 29635420  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 3528822 - 3528879
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 196  Q
    ||||||||||||||| | ||||||||| ||||||||||||||  |||| |||||||||    
T  3528822 ctatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagtt 3528879  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 281891 - 281842
Alignment:
Q  147 gagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 196  Q
    ||||||||| | ||||||||||||||||| ||||| |||| |||||||||    
T  281891 gagagctcatggaaataagctgaaaacaacttatagacatgtcataagtt 281842  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 6536986 - 6537027
Alignment:
Q  159 aaataagctgaaaacaagttataaacatttcataagttctcc 200  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  6536986 aaataagctgaaaacaacttatgaacatgtcataagttctcc 6537027  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 25670636 - 25670580
Alignment:
Q  140 tatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 196  Q
    ||||||||||||||   ||||||||||||||||||| |||| ||||| |||||||||    
T  25670636 tatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagtt 25670580  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 11707074 - 11707128
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 193  Q
    |||||||| ||||||   ||||||||||||||||||| |||||||||| ||||||    
T  11707074 ctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 35379067 - 35379021
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 185  Q
    ||||||||||||||| | ||||||||||||||||||| |||| ||||    
T  35379067 ctatcttggagagcttatgaaaataagctgaaaacaacttatgaaca 35379021  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 44443340 - 44443394
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 193  Q
    ||||||| ||||||  | ||||||||||||||||||| |||| ||||||||||||    
T  44443340 ctatctttgagagcatatgaaaataagctgaaaacaacttatgaacatttcataa 44443394  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 43199835 - 43199778
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 196  Q
    ||||||||||| ||| | |||| |||||||||||||| |||||||||| ||| |||||    
T  43199835 ctatcttggagggcttatgaaattaagctgaaaacaacttataaacatgtcacaagtt 43199778  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 43911050 - 43910990
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagttctc 199  Q
    |||||||||| ||||   || |||||||||||||||| |||| ||||| ||||||||||||    
T  43911050 ctatcttggaaagcttgtgataataagctgaaaacaacttatgaacatgtcataagttctc 43910990  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 4577008 - 4577045
Alignment:
Q  363 acacgaaagtttgttcctccaagatccaatgcataaaa 400  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  4577008 acacgaaagttagttcctccaaggtccaatgcataaaa 4577045  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 7714261 - 7714318
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 196  Q
    ||||||||||||||||| ||||||||| ||||||||  | ||  ||||||||||||||    
T  7714261 ctatcttggagagctcatgaaaataagttgaaaacagctcatcgacatttcataagtt 7714318  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 1288797 - 1288764
Alignment:
Q  229 ttgataagctcaaataagtcaatcaaaacaaact 262  Q
    |||||||||||||||||||||||| |||||||||    
T  1288797 ttgataagctcaaataagtcaatccaaacaaact 1288764  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 41633379 - 41633431
Alignment:
Q  139 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcat 191  Q
    |||| |||||||||| | ||||||||||||||||||| ||||| |||| ||||    
T  41633379 ctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtcat 41633431  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 38336848 - 38336816
Alignment:
Q  226 caattgataagctcaaataagtcaatcaaaaca 258  Q
    |||| ||||||||||||||||||||||||||||    
T  38336848 caatggataagctcaaataagtcaatcaaaaca 38336816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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