View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_low_23 (Length: 401)

Name: NF11386_low_23
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_low_23
NF11386_low_23
[»] chr6 (12 HSPs)
chr6 (1-393)||(25071233-25071630)
chr6 (1-144)||(26811337-26811480)
chr6 (1-144)||(27214245-27214388)
chr6 (1-144)||(27234840-27234983)
chr6 (1-100)||(26974924-26975023)
chr6 (1-144)||(26635521-26635661)
chr6 (1-144)||(26741487-26741627)
chr6 (1-145)||(27665333-27665471)
chr6 (4-155)||(26949481-26949629)
chr6 (1-98)||(26959039-26959136)
chr6 (4-91)||(26848541-26848628)
chr6 (4-146)||(27604924-27605066)
[»] chr2 (1 HSPs)
chr2 (4-77)||(17993903-17993976)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 25071630 - 25071233
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25071630 cctttgtcagaaagagctttataaagattaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 25071531  T
Q  101 gggtggaggacaaggatgaagaaggtaattgcatagccatgagaataagtggtagtgagtatagtttggtttggagtgtttgtgtctatcagatctgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25071530 gggtggaggacaaggatgaagaaggtaattgcatagccatgagaataagtggtagtgagtatagtttggtttggagtgtttgtgtctatcagatctgtaa 25071431  T
Q  201 aaaacatgaacatgaatga-----atttcacgaaagagttatttattagtttccatttatcaattgtcacgaaacttcctagttgttagtaggacagaac 295  Q
    |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25071430 aaaacatgaacatgaatgaattatatttcacgaaagagttatttattagtttccatttatcaattgtcacgaaacttcctagttgttagtaggacagaac 25071331  T
Q  296 catgtgacttcttggtaatatcattgacaaagattgcttacgattcatttttggacaaatacaagagtccatttaacattagtcacgaaacttccttt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25071330 catgtgacttcttggtaatatcattgacaaagattgcttacgattcatttttggacaaatacaagagtccatttaacattagtcatgaaacttccttt 25071233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 26811480 - 26811337
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26811480 cctttgtcacaaagagctttatagagatgaccggtgaagccagatcgagtgtcgatacccctgaaactaatgaacacgtcatagatgaaatcattagaga 26811381  T
Q  101 gggtggaggacaaggatgaagaaggtaattgcatagccatgaga 144  Q
    ||| ||||||| |||| |||||||||||||||||||||||||||    
T  26811380 gggaggaggacgaggaggaagaaggtaattgcatagccatgaga 26811337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 27214388 - 27214245
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  27214388 cctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattattagaga 27214289  T
Q  101 gggtggaggacaaggatgaagaaggtaattgcatagccatgaga 144  Q
    ||  ||||||  | |  |||||||||  ||||||||||||||||    
T  27214288 ggccggaggaagaagtagaagaaggtggttgcatagccatgaga 27214245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 27234840 - 27234983
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  27234840 cctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattattagaga 27234939  T
Q  101 gggtggaggacaaggatgaagaaggtaattgcatagccatgaga 144  Q
    ||  ||||||  | |  |||||||||  ||||||||||||||||    
T  27234940 ggccggaggaagaagtagaagaaggtggttgcatagccatgaga 27234983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26975023 - 26974924
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||    
T  26975023 cctttgtcagaaagagctttatagaggttaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacgtcataggtgaaatctttagaga 26974924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 26635661 - 26635521
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  26635661 cctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaatcattagaga 26635562  T
Q  101 gggtggaggacaaggatgaagaaggtaattgcatagccatgaga 144  Q
     |   ||||   |||| ||| | |||||||||||||||||||||    
T  26635561 cgaaagagg---aggaagaatatggtaattgcatagccatgaga 26635521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 26741627 - 26741487
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  26741627 cctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaatcattagaga 26741528  T
Q  101 gggtggaggacaaggatgaagaaggtaattgcatagccatgaga 144  Q
     |   ||||   |||| ||| | |||||||||||||||||||||    
T  26741527 cgaaagagg---aggaagaatatggtaattgcatagccatgaga 26741487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27665333 - 27665471
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagaga 100  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||  || ||||||||| |||||    
T  27665333 cctttgtcagaaagagccttatagaggttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatgaacacatcgaagttgaaatcataagaga 27665432  T
Q  101 gggtggaggacaaggatgaagaaggtaattgcatagccatgagaa 145  Q
    ||| ||      |||| |||| |||||||||||||||||||||||    
T  27665433 gggagg------aggaggaagtaggtaattgcatagccatgagaa 27665471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 26949629 - 26949481
Alignment:
Q  4 ttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagagaggg 103  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||| ||| |       
T  26949629 ttgtcagagagagctttatagagattaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacatcaaagttgaaatcataagaaa--- 26949533  T
Q  104 tggaggacaaggatgaagaaggtaattgcatagccatgagaataagtggtag 155  Q
     ||| |   |||| |||||| || ||||||||||||||||||||| ||||||    
T  26949532 aggaagtagaggaggaagaaagtgattgcatagccatgagaataaatggtag 26949481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26959136 - 26959039
Alignment:
Q  1 cctttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattaga 98  Q
    ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||    
T  26959136 cctttgtcagaaagagctttatagaggttaccggtgaaactgaatcgagtgtcggtgcccctgaaactaatgaagacgtcgtaggtgaaatcattaga 26959039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 26848628 - 26848541
Alignment:
Q  4 ttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaat 91  Q
    |||||||||||||||||||| |||||||| ||||||| ||||| ||||||||| |||||||||||||||||||| |||||| ||||||    
T  26848628 ttgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 26848541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 27604924 - 27605066
Alignment:
Q  4 ttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagagaggg 103  Q
    ||||||| |||||| || || ||||| ||||| |||||| |||||||||| || ||||| ||||||| |||||| |  ||  ||||  |||  || |  |    
T  27604924 ttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatg 27605023  T
Q  104 tggaggacaaggatgaagaaggtaattgcatagccatgagaat 146  Q
      |||||  ||||||| ||||||||||||||||||||||||||    
T  27605024 aagaggatgaggatgaggaaggtaattgcatagccatgagaat 27605066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 17993903 - 17993976
Alignment:
Q  4 ttgtcagaaagagctttataaagattaccggtgaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 77  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  17993903 ttgtcagaaagagctttatagagattaccggtgaaaccatatcgagtatcggtacccctgaaactaatgaacac 17993976  T

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