View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_25 (Length: 392)
Name: NF11386_low_25
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_25 |
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| [»] scaffold0879 (2 HSPs) |
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Alignment Details
Target: scaffold0879 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 3595 - 3396
Alignment:
| Q |
3 |
tgtatttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaa--caaattatctttcatgctataactttgcgtcacta |
100 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||| |||||||| ||||| ||||||| |
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| T |
3595 |
tgtatttgatcgaaatttggatttaatttattggtcaagaaaaccatatttctttataaaaaagcaaaagtatcttttatgctatagctttgtgtcacta |
3496 |
T |
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| Q |
101 |
ttgtcaatgaatt----aataaactacaacctaattacttgtcttgtcgatatgg----ttatttaatgagaaatggttatatgtattgtaaggaatatt |
192 |
Q |
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| T |
3495 |
ttttcaatgaattaataaataaactacaatctaattacttgtcttgtcgatatagtactttatttaatgagaaatggttatatgtattgt-aggaatatt |
3397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 3413 - 3311
Alignment:
| Q |
210 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtaccttaaaatttaata |
309 |
Q |
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| T |
3413 |
tgtattgta-ggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacctactataaaatttaata |
3315 |
T |
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| Q |
310 |
tttt |
313 |
Q |
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|||| |
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| T |
3314 |
tttt |
3311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 24469332 - 24469133
Alignment:
| Q |
3 |
tgtatttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaa--caaattatctttcatgctataactttgcgtcacta |
100 |
Q |
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| T |
24469332 |
tgtatttgatcgaaatttggatttaatttattggtcaagaaaaccatatttctttataaaaaagcaaaagtatcttttatgctatagctttgtgtcacta |
24469233 |
T |
|
| Q |
101 |
ttgtcaatgaatt----aataaactacaacctaattacttgtcttgtcgatatgg----ttatttaatgagaaatggttatatgtattgtaaggaatatt |
192 |
Q |
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|| |||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24469232 |
ttttcaatgaattaataaataaactacaatctaattacttgtcttgtcgatatagtactttatttaatgagaaatggttatatgtattgt-aggaatatt |
24469134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 24469150 - 24469048
Alignment:
| Q |
210 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtaccttaaaatttaata |
309 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
24469150 |
tgtattgta-ggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacctactataaaatttaata |
24469052 |
T |
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| Q |
310 |
tttt |
313 |
Q |
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|
|||| |
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|
| T |
24469051 |
tttt |
24469048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 24422477 - 24422571
Alignment:
| Q |
101 |
ttgtcaatgaattaataaactacaacctaattacttgtcttgtcgatatgg---ttatttaatgagaaatggttatatgtattgtaaggaatattt |
193 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24422477 |
ttgtcaatgaattaataaactacaatctaattacttgtcttgtcgatatggtacttatttaatgagaaatggttatatgtattgt-aggaatattt |
24422571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 24478620 - 24478707
Alignment:
| Q |
210 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtacctt |
298 |
Q |
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| T |
24478620 |
tgtattgta-ggaatatttcgttttggtttaaaaaatttaattgacttgttgtatatataattactgtctatctcagtcgacctacctt |
24478707 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 24422554 - 24422662
Alignment:
| Q |
210 |
tgtattgtaaggaatatttcgttttggtttaaaaaatttaattgacttggtgtatatataattaccgtctatctcagtctacgtaccttaaaatttaata |
309 |
Q |
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||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| || |||||| || ||||| |
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| T |
24422554 |
tgtattgta-ggaatatttcgttttgatttaaacaatgtaattgacttggtgtatatataattactgtctatctcagtcgacctacctt--catataata |
24422650 |
T |
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| Q |
310 |
tttttataattc |
321 |
Q |
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|||||||||||| |
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| T |
24422651 |
tttttataattc |
24422662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 24422401 - 24422477
Alignment:
| Q |
2 |
gtgtatttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaac-aaattatcttt |
77 |
Q |
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|||||||||||||| ||||||||||||||||||| || ||||||||||||||||| | ||||| | ||||||||||| |
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| T |
24422401 |
gtgtatttgatcgttatttggatttaatttattggtccagaaaaccatatttcttataaaaaatcaaaattatcttt |
24422477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 24478344 - 24478401
Alignment:
| Q |
67 |
aaattatctttcatgctataacttt-gcgtcactattgtcaatgaattaataaactac |
123 |
Q |
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| T |
24478344 |
aaattatgttttatgctataacttttgtgccactattgtcaatgaattaataagctac |
24478401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 24478597 - 24478637
Alignment:
| Q |
152 |
ttatttaatgagaaatggttatatgtattgtaaggaatattt |
193 |
Q |
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| T |
24478597 |
ttatttaatgtgaaatggttatatgtattgt-aggaatattt |
24478637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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