View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_28 (Length: 375)
Name: NF11386_low_28
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_28 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 353172 - 353546
Alignment:
| Q |
1 |
atttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttatacgatggggagagca |
100 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
353172 |
atttgatgaagctttacaagttgtcgaaagaatgaatgctgttgggtgtagacctgatacactttttttcaattcgttcatttatacgatggggagagca |
353271 |
T |
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| Q |
101 |
ggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaatgatttctatgtttt |
200 |
Q |
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| T |
353272 |
ggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaatgatttctatgtttt |
353371 |
T |
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| Q |
201 |
gttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacatattatcacccattgat |
300 |
Q |
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| T |
353372 |
gttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacttattatcacccattgat |
353471 |
T |
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| Q |
301 |
caagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaatatca |
375 |
Q |
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| T |
353472 |
caagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaatatca |
353546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 10579952 - 10580323
Alignment:
| Q |
1 |
atttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttatacgatggggagagca |
100 |
Q |
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| T |
10579952 |
atttgacgaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacgctctttttcaattcgttcatttatacgttggggagagca |
10580051 |
T |
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| Q |
101 |
ggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaatgatttctatgtttt |
200 |
Q |
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| T |
10580052 |
ggcagaatagatgatgctacatatgtattcaaggttgcgatgccgaaggccaatgtggccccaaatacatcgacctataactcaatggtttctatgtttt |
10580151 |
T |
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| Q |
201 |
gttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacatattatcacccattgat |
300 |
Q |
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| T |
10580152 |
gttactatgcacgtgaagagagagcttttggaatactgaaggagatggaaaaatcaggtctttgtaagccggatattcagac---ttttcacccattgat |
10580248 |
T |
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| Q |
301 |
caagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaatatca |
375 |
Q |
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| T |
10580249 |
caagtcatgctttaaaatgagagaaatagatacttggttgaatgatatattaaatgatatggtaaataaatatca |
10580323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 24578359 - 24578730
Alignment:
| Q |
1 |
atttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttatacgatggggagagca |
100 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
24578359 |
atttgaagaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacactctttttcaattcgctcatttatacattggggagagca |
24578458 |
T |
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| Q |
101 |
ggcagaatagatgatgctacacatatattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaatgatttctatgtttt |
200 |
Q |
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| T |
24578459 |
ggcagaatagatgatgctacacatgtattcaaggttgcgatgccgaaggccagtgtggccccaaatacatcgacctataactcaatgatttctatgtttt |
24578558 |
T |
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| Q |
201 |
gttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcctgatattcagacatattatcacccattgat |
300 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
24578559 |
gttactatgcacaagaagagagagcttttggcatactgaaggagatggaaaaatcaggtctttgtaagcctgatattcagac---ttatcacccattgat |
24578655 |
T |
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| Q |
301 |
caagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaatatca |
375 |
Q |
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| T |
24578656 |
caagtcatgctttaaaatgagggaaatagatacttggttgaatgatatattaaatgacatggtaaataaatatca |
24578730 |
T |
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