View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_31 (Length: 352)
Name: NF11386_low_31
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 31173050 - 31172704
Alignment:
| Q |
18 |
cttctgtggccatgttaacagaattgaagtatgaatgaaaacaaattgatacgtagaaagagtttgttgaaagtggga-------------gaagatgat |
104 |
Q |
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| T |
31173050 |
cttctgtggccatgttaacagaattgaagtatgaatgaaaacaaattgatacgtagaaagaatttgttgaaagtgggaattgaatgtgagagaagatgat |
31172951 |
T |
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| Q |
105 |
ggaattttatggtttaaatagtgaaataatattctgttacttaattctcattggttgagggaacccgacaaggatcgatatctttcttccagtttgaata |
204 |
Q |
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| T |
31172950 |
ggaattttatggtttaaatagtgaaataatattctgttacttaattctcattggttgagggaacccgacaaggatcgatatctttcttccagtttgaata |
31172851 |
T |
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| Q |
205 |
tgagcccttcgattgacctgctatcgacggttggtgttgattaattgagcggtggaaaataattaagaaggaatgttattgtgtgatttggccttttagg |
304 |
Q |
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| T |
31172850 |
tgagcccttcgattgacctgctatcgacggttggtgttgattaattgagcggtggaaaataattaagaaggaatgttattgtgtgatttggccttttagg |
31172751 |
T |
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| Q |
305 |
tgtgcttttaagctatattcatttgctcataacttcatctgtgcttc |
351 |
Q |
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| T |
31172750 |
tgtgcttttaagctatattcatttgctcataacttcacctgtgcttc |
31172704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 105 - 295
Target Start/End: Original strand, 31227507 - 31227696
Alignment:
| Q |
105 |
ggaattttatggtttaaatagtgaaataatattctgttacttaattctcattggttgagggaacccgacaaggatcgatatctttcttccagtttgaata |
204 |
Q |
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| T |
31227507 |
ggaatttgatgatttaaatagtgaaataatatacggttacttaattctcattggttgagagaacccgacaaggatcgatatcttttttcttgtttgaatg |
31227606 |
T |
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| Q |
205 |
tgagcccttcgattgacctgctatcgacggttggtgttgattaattgagcggtggaaaataattaagaaggaatgttattgtgtgatttgg |
295 |
Q |
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| T |
31227607 |
tgagcccttcgatggggatgttatcgacggttgttgttgattgattgagc-gtggagaataattaagaaggaatgttactgtatgatttgg |
31227696 |
T |
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