View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_32 (Length: 340)
Name: NF11386_low_32
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_32 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 29 - 340
Target Start/End: Original strand, 13885153 - 13885464
Alignment:
| Q |
29 |
aacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtg |
128 |
Q |
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| T |
13885153 |
aacgacagcggcatcgatccaccgggatcgaaacatttgagacagtcgaagcttaacagaactgattgtgcaaacacattgaagtggttaggtgaaagta |
13885252 |
T |
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| Q |
129 |
attgaaattttacctcacccaattgttgttctaaatagacattcgttcctattggaagagtgttggcaatctcttgataggtgaatttgaagtttgacca |
228 |
Q |
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| T |
13885253 |
attgaaattttacctcacccaattgttgttttgaatagaaagtcgttcctattggaagagtgttggcaatctcttgacgggtgaatctgaagtttgacct |
13885352 |
T |
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| Q |
229 |
cggcgtttgttgtttacaaatgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctggtatcagagatcgttgggaatcacct |
328 |
Q |
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| T |
13885353 |
cggcgtttgttgtttacaactgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctgggatccgagattgttgggaatcaccc |
13885452 |
T |
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| Q |
329 |
tgtgaattttca |
340 |
Q |
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| T |
13885453 |
tgtgaattttca |
13885464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 37191464 - 37191319
Alignment:
| Q |
1 |
cgaatttgaaacagaaaattgtgggagaaacgacagcggca-tcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgc |
99 |
Q |
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| T |
37191464 |
cgaattcgaaacataaaattgtgggagaaacgacagcggaaatcaatccatggggatcgaaacatttgagacagtcgaagcttagcggaactgattgtgc |
37191365 |
T |
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| Q |
100 |
aaacacattgaagtggttaggtgagagtgattgaaattttacctca |
145 |
Q |
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| T |
37191364 |
aaacacattgaagtggttaggtgagagtgattgaaattttacctca |
37191319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 22517977 - 22518121
Alignment:
| Q |
1 |
cgaatttgaaacagaaaattgtgggagaaacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgca |
100 |
Q |
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| T |
22517977 |
cgaatttgaaatagaaaattgtgggaaaaacgaaagcggtatcgatccaccgggatcgaaacatttgagacagtcgaagcttaaaggaattgattgtgca |
22518076 |
T |
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| Q |
101 |
aacacattgaagtggttaggtgagagtgattgaaattttacctca |
145 |
Q |
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| T |
22518077 |
aacacttggaagtggttagatgagagtgattgaaattttacctca |
22518121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 33457255 - 33457169
Alignment:
| Q |
57 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacct |
143 |
Q |
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|||||||||||| | |||| || ||||| |||| ||||| || | |||||||||| |||||| |||||||||| ||||||||||| |
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| T |
33457255 |
cgaaacatttgacagagtccaaccttaaaggaattgattatgaagacacattgaatgtgttaggcgagagtgattaaaattttacct |
33457169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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