View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_34 (Length: 338)
Name: NF11386_low_34
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 44026968 - 44026665
Alignment:
| Q |
20 |
tgcgcttcagaggcaactacaaaacctattccatttacatgattcaggtctagaacaatctctcatagacactcttcctgttttcaagtaccaagattta |
119 |
Q |
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| T |
44026968 |
tgcgcttcagaggcaactacaaaacctattccatttacatgattcaggtctagaacaatctctcatagacactcttcctcttttcaagtaccaagattta |
44026869 |
T |
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| Q |
120 |
ttgggtttgaaggaaccttttgattgtgctgtgtgtctatgtgagttttctgagcaggagaagctgaggttggttcctatatgccgccatgcttttcata |
219 |
Q |
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| T |
44026868 |
ttgggtttgaaggaaccttttgattgtgctgtgtgtctatgtgagttttctgagcaggagaagctgaggttggttcctatatgccgccatgcttttcata |
44026769 |
T |
|
| Q |
220 |
tgaattgtcttgacacatggcttctctcaaactctacttgtcctctttgtagagcaaatatctctagctctagttttcctttggagaatgttgatgattc |
319 |
Q |
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| T |
44026768 |
tgaattgtcttgacacatggcttctctcaaactctacttgtcctctttgtagagcaaatatctctagctctagttttcctttggagaatgttgatgattc |
44026669 |
T |
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| Q |
320 |
tttg |
323 |
Q |
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|||| |
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| T |
44026668 |
tttg |
44026665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 53902476 - 53902407
Alignment:
| Q |
205 |
gccatgcttttcatatgaattgtcttgacacatggcttctctcaaactctacttgtcctctttgtagagc |
274 |
Q |
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| T |
53902476 |
gccatgcttttcatatggagtgtattgatacatggcttttgtctcactctacttgtcctctttgtagagc |
53902407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 273
Target Start/End: Complemental strand, 1873681 - 1873531
Alignment:
| Q |
123 |
ggtttgaaggaaccttttgattgtgctgtgtgtctatgtgagttttctgagcaggagaagctgaggttggttcctatatgccgccatgcttttcatatga |
222 |
Q |
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|||||||| || ||||||||||||||||| ||| | ||||||||| ||||| | || ||||| || ||| | ||||| || |||||||||||||||| | |
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| T |
1873681 |
ggtttgaatgagccttttgattgtgctgtttgtttgtgtgagtttactgagaaagacaagctaagattgttacctatgtgtagccatgcttttcatataa |
1873582 |
T |
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| Q |
223 |
attgtcttgacacatggcttctctcaaactctacttgtcctctttgtagag |
273 |
Q |
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|||| | || || ||||| || |||||||||||||||||||||||||||| |
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| T |
1873581 |
gttgtatagatacttggctactttcaaactctacttgtcctctttgtagag |
1873531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 26669640 - 26669706
Alignment:
| Q |
207 |
catgcttttcatatgaattgtcttgacacatggcttctctcaaactctacttgtcctctttgtagag |
273 |
Q |
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| T |
26669640 |
catgcttttcatattgattgtatcgacacgtggcttctttcgaattcaacttgtcctctttgtagag |
26669706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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